Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_L14
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   2.8  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   8.4  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   8.4  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   8.4  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   8.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.4  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 206 LGDYRLR*RGVLLPSRXXGKSS 271
           + DY++  + +LLP R  GKS+
Sbjct: 128 VADYKIEGKVLLLPVRGAGKSN 149


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 235 RSSAIKXXREIFKRAEQYVKEYRIKER 315
           RS +    RE  K+  QY K Y  KE+
Sbjct: 2   RSCSRDRNREYRKKDRQYEKLYNEKEK 28


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 235 RSSAIKXXREIFKRAEQYVKEYRIKER 315
           RS +    RE  K+  QY K Y  KE+
Sbjct: 2   RSCSRDRNREYRKKDRQYEKLYNEKEK 28


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 235 RSSAIKXXREIFKRAEQYVKEYRIKER 315
           RS +    RE  K+  QY K Y  KE+
Sbjct: 2   RSCSRDRNREYRKKDRQYEKLYNEKEK 28


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 235 RSSAIKXXREIFKRAEQYVKEYRIKER 315
           RS +    RE  K+  QY K Y  KE+
Sbjct: 2   RSCSRDRNREYRKKDRQYEKLYNEKEK 28


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 494 FRRTNTPLFIWRSLNSCRTLRTFG 423
           F    TP+FI+ S N+   L   G
Sbjct: 96  FMMIKTPIFIYNSFNTGFALGNLG 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,099
Number of Sequences: 438
Number of extensions: 2364
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)