Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_L13
         (447 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X65923-1|CAA46716.1|  133|Homo sapiens fau protein.                   140   1e-33
X65921-1|CAA46714.1|  133|Homo sapiens fau 1 protein.                 140   1e-33
CR541974-1|CAG46772.1|  133|Homo sapiens FAU protein.                 140   1e-33
BC033877-1|AAH33877.1|  133|Homo sapiens Finkel-Biskis-Reilly mu...   140   1e-33
AY398663-1|AAQ87877.1|  133|Homo sapiens Finkel-Biskis-Reilly mu...   140   1e-33
AK026639-1|BAB15515.1|  133|Homo sapiens protein ( Homo sapiens ...   140   1e-33
X75315-1|CAA53064.1|  230|Homo sapiens SEB4B protein.                  38   0.012
AY166864-1|AAO39152.1|  348|Homo sapiens truncated alpha-1,4-gal...    29   9.5  
AK027396-1|BAB55082.1|  171|Homo sapiens protein ( Homo sapiens ...    29   9.5  

>X65923-1|CAA46716.1|  133|Homo sapiens fau protein.
          Length = 133

 Score =  140 bits (340), Expect = 1e-33
 Identities = 69/133 (51%), Positives = 85/133 (63%), Gaps = 3/133 (2%)
 Frame = +3

Query: 45  MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLHXXXXXXX---X 215
           MQL +R Q  H  +V GQE++ QIK  + +L  +  ED  + L GAPL            
Sbjct: 1   MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVE 60

Query: 216 XXXXXXXTVPLLGGKVHGSLARAGKVKGQTPKVEKQQKXXXXTGRAKRTIQYNRRFVNVV 395
                     +LGGKVHGSLARAGKV+GQTPKV KQ+K    TGRAKR +QYNRRFVNVV
Sbjct: 61  ALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVV 120

Query: 396 QTFGRRRGPNSNS 434
            TFG+++GPN+NS
Sbjct: 121 PTFGKKKGPNANS 133


>X65921-1|CAA46714.1|  133|Homo sapiens fau 1 protein.
          Length = 133

 Score =  140 bits (340), Expect = 1e-33
 Identities = 69/133 (51%), Positives = 85/133 (63%), Gaps = 3/133 (2%)
 Frame = +3

Query: 45  MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLHXXXXXXX---X 215
           MQL +R Q  H  +V GQE++ QIK  + +L  +  ED  + L GAPL            
Sbjct: 1   MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVE 60

Query: 216 XXXXXXXTVPLLGGKVHGSLARAGKVKGQTPKVEKQQKXXXXTGRAKRTIQYNRRFVNVV 395
                     +LGGKVHGSLARAGKV+GQTPKV KQ+K    TGRAKR +QYNRRFVNVV
Sbjct: 61  ALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVV 120

Query: 396 QTFGRRRGPNSNS 434
            TFG+++GPN+NS
Sbjct: 121 PTFGKKKGPNANS 133


>CR541974-1|CAG46772.1|  133|Homo sapiens FAU protein.
          Length = 133

 Score =  140 bits (340), Expect = 1e-33
 Identities = 69/133 (51%), Positives = 85/133 (63%), Gaps = 3/133 (2%)
 Frame = +3

Query: 45  MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLHXXXXXXX---X 215
           MQL +R Q  H  +V GQE++ QIK  + +L  +  ED  + L GAPL            
Sbjct: 1   MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVE 60

Query: 216 XXXXXXXTVPLLGGKVHGSLARAGKVKGQTPKVEKQQKXXXXTGRAKRTIQYNRRFVNVV 395
                     +LGGKVHGSLARAGKV+GQTPKV KQ+K    TGRAKR +QYNRRFVNVV
Sbjct: 61  ALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVV 120

Query: 396 QTFGRRRGPNSNS 434
            TFG+++GPN+NS
Sbjct: 121 PTFGKKKGPNANS 133


>BC033877-1|AAH33877.1|  133|Homo sapiens Finkel-Biskis-Reilly
           murine sarcoma virus (FBR-MuSV) ubiquitously expressed
           protein.
          Length = 133

 Score =  140 bits (340), Expect = 1e-33
 Identities = 69/133 (51%), Positives = 85/133 (63%), Gaps = 3/133 (2%)
 Frame = +3

Query: 45  MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLHXXXXXXX---X 215
           MQL +R Q  H  +V GQE++ QIK  + +L  +  ED  + L GAPL            
Sbjct: 1   MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVE 60

Query: 216 XXXXXXXTVPLLGGKVHGSLARAGKVKGQTPKVEKQQKXXXXTGRAKRTIQYNRRFVNVV 395
                     +LGGKVHGSLARAGKV+GQTPKV KQ+K    TGRAKR +QYNRRFVNVV
Sbjct: 61  ALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVV 120

Query: 396 QTFGRRRGPNSNS 434
            TFG+++GPN+NS
Sbjct: 121 PTFGKKKGPNANS 133


>AY398663-1|AAQ87877.1|  133|Homo sapiens Finkel-Biskis-Reilly
           murine sarcoma virus (FBR-MuSV) ubiquitously expressed
           (fo protein.
          Length = 133

 Score =  140 bits (340), Expect = 1e-33
 Identities = 69/133 (51%), Positives = 85/133 (63%), Gaps = 3/133 (2%)
 Frame = +3

Query: 45  MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLHXXXXXXX---X 215
           MQL +R Q  H  +V GQE++ QIK  + +L  +  ED  + L GAPL            
Sbjct: 1   MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVE 60

Query: 216 XXXXXXXTVPLLGGKVHGSLARAGKVKGQTPKVEKQQKXXXXTGRAKRTIQYNRRFVNVV 395
                     +LGGKVHGSLARAGKV+GQTPKV KQ+K    TGRAKR +QYNRRFVNVV
Sbjct: 61  ALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVV 120

Query: 396 QTFGRRRGPNSNS 434
            TFG+++GPN+NS
Sbjct: 121 PTFGKKKGPNANS 133


>AK026639-1|BAB15515.1|  133|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22986 fis, clone KAT11742. ).
          Length = 133

 Score =  140 bits (340), Expect = 1e-33
 Identities = 69/133 (51%), Positives = 85/133 (63%), Gaps = 3/133 (2%)
 Frame = +3

Query: 45  MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLHXXXXXXX---X 215
           MQL +R Q  H  +V GQE++ QIK  + +L  +  ED  + L GAPL            
Sbjct: 1   MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVE 60

Query: 216 XXXXXXXTVPLLGGKVHGSLARAGKVKGQTPKVEKQQKXXXXTGRAKRTIQYNRRFVNVV 395
                     +LGGKVHGSLARAGKV+GQTPKV KQ+K    TGRAKR +QYNRRFVNVV
Sbjct: 61  ALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVV 120

Query: 396 QTFGRRRGPNSNS 434
            TFG+++GPN+NS
Sbjct: 121 PTFGKKKGPNANS 133


>X75315-1|CAA53064.1|  230|Homo sapiens SEB4B protein.
          Length = 230

 Score = 38.3 bits (85), Expect = 0.012
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +3

Query: 357 RTIQYNRRFVNVVQTFGRRRG 419
           R +QYNRRFVNVV TFG+++G
Sbjct: 1   RRMQYNRRFVNVVPTFGKKKG 21


>AY166864-1|AAO39152.1|  348|Homo sapiens truncated
           alpha-1,4-galactosyltransferase protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 19/69 (27%), Positives = 24/69 (34%)
 Frame = -3

Query: 298 PLTLPARAKDPCTLPPSNGTVRXXXXXXXXETRHESCKGAPHNDRVRSSSPTAARVRMRS 119
           P   PA A  PC L PS  +           +   SC+G      + +     AR R  S
Sbjct: 268 PRAAPAAASPPCPLRPSTPSPGRTGRSTLRTSTRRSCRGCSVPPMLSTCGTRRARAR-GS 326

Query: 118 LI*PMDSWP 92
              P   WP
Sbjct: 327 RPRPGHCWP 335


>AK027396-1|BAB55082.1|  171|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14490 fis, clone MAMMA1002886. ).
          Length = 171

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 80  PGRQWPGVHWSDQGTHSY 133
           PG  W G HW  QG  +Y
Sbjct: 55  PGSAWSGDHWDSQGQEAY 72


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,407,925
Number of Sequences: 237096
Number of extensions: 1194206
Number of successful extensions: 6278
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6272
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)