Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_L13
         (447 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   4.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   4.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.1  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 50  VAYQRAIDTRPGRQWPG 100
           VA        PGR WPG
Sbjct: 906 VARSNVTPRSPGRAWPG 922


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 361 QFSTTEDLSTLCR 399
           QF+  EDL  LCR
Sbjct: 260 QFAENEDLEELCR 272


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 52  NCIVVKSYQPSLTS 11
           NC+VV+   PSL S
Sbjct: 613 NCVVVEETIPSLNS 626


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,393
Number of Sequences: 438
Number of extensions: 2083
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)