Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_L12
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 121 1e-28
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 58 1e-09
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 51 2e-07
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 45 1e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 35 0.012
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 35 0.012
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 30 0.34
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 30 0.34
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 29 0.77
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 28 1.0
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 1.8
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 3.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 7.2
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 25 7.2
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 7.2
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 9.5
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 9.5
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 25 9.5
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 121 bits (291), Expect = 1e-28
Identities = 60/149 (40%), Positives = 77/149 (51%), Gaps = 13/149 (8%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE--EADRCYRCNG 342
CY C GH ARECT+G + C+ CN+TGH A +C E + CY C
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGT 65
Query: 343 TGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGRES--------ATXTCYNCNKSG 489
GH+ R+C SP+ CY C + GHIAR+C G++S + CY C G
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYG 125
Query: 490 HISRNCPDGTKTCYVCGKPGHISRECDEA 576
H +R+C G K CY CGK GH S EC +A
Sbjct: 126 HQARDCTMGVK-CYSCGKIGHRSFECQQA 153
Score = 101 bits (243), Expect = 7e-23
Identities = 54/153 (35%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Frame = +1
Query: 163 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC-----KEEADRC 327
S+CY CN+TGH A ECT+ +Q + C+ C GH RDC + C
Sbjct: 36 SICYNCNQTGHKASECTE----------PQQEKTCYACGTAGHLVRDCPSSPNPRQGAEC 85
Query: 328 YRCNGTGHIARECAQSPDEP-----------SCYNCNKTGHIARNCPEGGRESATXTCYN 474
Y+C GHIAR+C + + +CY C GH AR+C G + CY+
Sbjct: 86 YKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK------CYS 139
Query: 475 CNKSGHISRNCPDGT--KTCYVCGKPGHISREC 567
C K GH S C + + CY C +PGHI+ C
Sbjct: 140 CGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 99.5 bits (237), Expect = 4e-22
Identities = 44/119 (36%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Frame = +1
Query: 250 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 429
R +C+ C GH AR+C + CY CN TGH A EC + E +CY C GH+ R+
Sbjct: 14 RPGPRCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Query: 430 CPEGGRESATXTCYNCNKSGHISRNC-PDGTKT------------CYVCGKPGHISREC 567
CP CY C + GHI+R+C +G ++ CY CG GH +R+C
Sbjct: 73 CPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDC 131
Score = 93.5 bits (222), Expect = 2e-20
Identities = 43/99 (43%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +1
Query: 139 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKCNRTGHFARDCKEE 315
S P + CYKC R GH AR+C G S G +R C+ C GH ARDC
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Query: 316 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 432
+CY C GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 135 V-KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 74.1 bits (174), Expect = 2e-14
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +1
Query: 385 PSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNC--PDGTKTCYVCGKPGHIS 558
P CYNC + GH AR C +G CYNCN++GH + C P KTCY CG GH+
Sbjct: 17 PRCYNCGENGHQARECTKGS------ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV 70
Query: 559 RECDEARN 582
R+C + N
Sbjct: 71 RDCPSSPN 78
Score = 31.9 bits (69), Expect = 0.083
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 151 AMSSSVCYKCNRTGHFARECT 213
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 57.6 bits (133), Expect = 1e-09
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Frame = +1
Query: 250 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 411
R R+K CF C + GH +DC E D C+RC H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 412 GHIARNCPEG--GRESATXTCYNCNKSGHISRNCPDGTK 522
GH++ C + G C C+ H++++C K
Sbjct: 133 GHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNK 171
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +1
Query: 358 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNC----PDGTKT 525
R Q + C+ C + GHI ++CPE + C+ C H C P
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAK 125
Query: 526 CYVCGKPGHISRECDE 573
C++C + GH+S +C++
Sbjct: 126 CFICHENGHLSGQCEQ 141
Score = 47.2 bits (107), Expect = 2e-06
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD----RCYRC 336
C+ C + GH ++C + ++D+ CF+C H C ++ +C+ C
Sbjct: 79 CFACRQQGHIVQDCPE----AKDN-----VSICFRCGSKEHSLNACSKKGPLKFAKCFIC 129
Query: 337 NGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRESAT 459
+ GH++ +C Q+P P C C+ H+A++C + ++ +
Sbjct: 130 HENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +1
Query: 163 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE-------EAD 321
S+C++C H C++ G + + KCF C+ GH + C++ +
Sbjct: 100 SICFRCGSKEHSLNACSKKGPL--------KFAKCFICHENGHLSGQCEQNPKGLYPKGG 151
Query: 322 RCYRCNGTGHIARECAQ 372
C C+ H+A++C Q
Sbjct: 152 CCKFCSSVHHLAKDCDQ 168
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +1
Query: 139 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE 312
SK + + C+ C+ GH + +C Q G + C C+ H A+DC +
Sbjct: 116 SKKGPLKFAKCFICHENGHLSGQCEQ-----NPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
Score = 28.7 bits (61), Expect = 0.77
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 520 KTCYVCGKPGHISRECDEARN 582
K C+ C + GHI ++C EA++
Sbjct: 77 KFCFACRQQGHIVQDCPEAKD 97
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 50.8 bits (116), Expect = 2e-07
Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 391 CYNCNKTGHIARNCPEGGRESATXTCYNCNK-SGHISRNCPDGTKTCYVCGKPGHISREC 567
C+NC GHI+++CP C C HIS CP TK C CG GHI+ C
Sbjct: 89 CHNCKGNGHISKDCPH-------VLCTTCGAIDDHISVRCP-WTKKCMNCGLLGHIAARC 140
Query: 568 DEAR 579
E R
Sbjct: 141 SEPR 144
Score = 48.8 bits (111), Expect = 7e-07
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Frame = +1
Query: 277 NRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNK-TGHIARNCPEGGRES 453
+R +F D E+ C+ C G GHI+++C C C HI+ CP
Sbjct: 74 SRGRYFGSD-PSESIVCHNCKGNGHISKDC----PHVLCTTCGAIDDHISVRCP------ 122
Query: 454 ATXTCYNCNKSGHISRNCPD----GTKTCYVCGKPGHISREC 567
T C NC GHI+ C + G + C C H S C
Sbjct: 123 WTKKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTC 164
Score = 40.3 bits (90), Expect = 2e-04
Identities = 32/130 (24%), Positives = 46/130 (35%), Gaps = 6/130 (4%)
Frame = +1
Query: 160 SSVCYKCNRTGHFAREC------TQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 321
S VC+ C GH +++C T G + S +KC C GH A C E
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145
Query: 322 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISR 501
R R T H + + Y K + + E CYNC H
Sbjct: 146 RGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSE-----VRKFCYNCASDEHFGD 200
Query: 502 NCPDGTKTCY 531
+C +++ Y
Sbjct: 201 DCTLPSRSNY 210
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.8 bits (101), Expect = 1e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 391 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCP 510
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +1
Query: 445 RESATXTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEARN*PQPP 597
R+ C NC GH +CP+ C CG GHI+R+C R+ QPP
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC-PVRD-QQPP 357
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = +1
Query: 253 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 387
+ + C C GH DC E + C C GHIAR+C +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +1
Query: 160 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 306
+ VC C GH +C + R + + C C GH ARDC
Sbjct: 308 NQVCQNCGNVGHRRFDCPE-----RIN--HTMNIVCRHCGSIGHIARDC 349
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 34.7 bits (76), Expect = 0.012
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 490 HISRNCPDGTKTCYVCGKPGHISREC 567
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 163 SVCYKCNRTGHFAREC 210
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +1
Query: 289 HFARDCKEEADRCYRCNGTGHIAREC 366
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 463 TCYNCNKSGHISRNC 507
TCY C K+ H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 9.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 265 CFKCNRTGHFARDCK 309
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 34.7 bits (76), Expect = 0.012
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 490 HISRNCPDGTKTCYVCGKPGHISREC 567
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 163 SVCYKCNRTGHFAREC 210
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +1
Query: 289 HFARDCKEEADRCYRCNGTGHIAREC 366
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 463 TCYNCNKSGHISRNC 507
TCY C K+ H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 9.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 265 CFKCNRTGHFARDCK 309
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 370 QSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCN-KSGHISRNCPDGTKTCYVCG 540
++ ++P+ N + N + T TC NC ++ + R PDG C CG
Sbjct: 603 KNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 29.9 bits (64), Expect = 0.34
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +1
Query: 427 NCPEGGRESATXTCYN----CNKSGHISRNCPDGTKTCYVC 537
+CP+G E T C+N C +G+IS P VC
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 28.7 bits (61), Expect = 0.77
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 145 PIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR 300
P A +V K N GH E G V +S + K + +R G F+R
Sbjct: 384 PKAAPKAVSQKTNVDGHRNHEAKHGNTVQNESKSQKSSNKEGRSSRGGFFSR 435
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 442 GRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKP 546
GR+ T C NC + GH+ N K C + G+P
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +1
Query: 370 QSPDEPSCYNCNKTGHIARN--CPEGGR 447
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 247 NRQREKCFKCNRTGHFARDCKEEA 318
+RQ KC +C RT + +++C+ +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +1
Query: 265 CFKCNRTGHFARDCKEEADRCY----RCNGTGHIARECAQSPDEPS 390
C++C + GH+ + C AD Y R T I R ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +1
Query: 358 RECAQSPDEPS-----CYNCNKTGHIARNCP 435
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 466 CYNCNKSGHISRNCPDGTKTCYVCGKP 546
CY C + GH + CP Y GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210
Score = 25.4 bits (53), Expect = 7.2
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +1
Query: 166 VCYKCNRTGHFAREC 210
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = -2
Query: 175 CSKRLNSLRSVLKILEHLRH*CNDRSTINYPMNLQISCNL*RFYSKEASHHHYEN 11
C KR V + H H C++R P L++SC R K Y+N
Sbjct: 731 CGKRRMYCEHVCQSPCHAGHPCDERIPCKAP--LEVSCECGRIRKKVTCDASYDN 783
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 257 VRSASSATAQDTLRGIARKRLTVA 328
VRSA S+ Q T R +A+ +TVA
Sbjct: 50 VRSARSSMEQPTFRPVAKNSVTVA 73
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 508 PDGTKTCYVCGKPGHISRECDEARN 582
PDGT YV +PG IS +A N
Sbjct: 64 PDGTTMVYVFPRPGTISPWSSKATN 88
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/70 (22%), Positives = 27/70 (38%)
Frame = -2
Query: 514 RRDSCGRCGRTCCSYSRXASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALCAQCRY 335
++DS +CCS + + + P S CCS T+ + ++
Sbjct: 228 KKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQE-KKGCCSTEKTSCCSQEKKSCCTSEKPS 286
Query: 334 ICSNGQPLPC 305
CSNG+ C
Sbjct: 287 CCSNGKSTVC 296
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 464 VCVADSRPPSGQFRAMWP 411
V ++D RPP + RA WP
Sbjct: 302 VSISDYRPPKKRKRAAWP 319
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +1
Query: 244 FNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 342
F CFKC + F K+E Y C+G
Sbjct: 257 FAEDLSMCFKCVKKIQFKTKIKDELYAVYFCSG 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,609
Number of Sequences: 5004
Number of extensions: 43340
Number of successful extensions: 212
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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