Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_L10
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...   254   1e-68
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...   246   2e-66
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...   222   4e-59
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...   217   1e-57
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...   171   6e-44
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    95   6e-21
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    64   2e-11
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    60   3e-10
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    29   0.44 
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   2.3  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    27   2.3  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    26   5.4  
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    25   7.2  

>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score =  254 bits (621), Expect = 1e-68
 Identities = 120/147 (81%), Positives = 132/147 (89%)
 Frame = +3

Query: 210 YVAFTDTERLIGDAAKNXVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGK 389
           YVAFTDTERLIGDAAKN VAMNP+NTIFDAKRLIGRKF+D  VQ+DMKHWPF+V+S  GK
Sbjct: 39  YVAFTDTERLIGDAAKNQVAMNPHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGK 98

Query: 390 PXIXVXYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD 569
           P + V YKGE KTF PEE+SSMVL KM+ETAEAYLG  V +AV+TVPAYFNDSQRQATKD
Sbjct: 99  PVLQVEYKGETKTFTPEEISSMVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKD 158

Query: 570 AGTISGLNVLRIINEPTAAAIAYGLDK 650
           AG I+GLNVLRIINEPTAAAIAYGLD+
Sbjct: 159 AGLIAGLNVLRIINEPTAAAIAYGLDR 185



 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 140 VGVFQHGKVEIIANDQ 187
           VG F + +VEIIANDQ
Sbjct: 16  VGHFSNNRVEIIANDQ 31


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score =  246 bits (602), Expect = 2e-66
 Identities = 116/147 (78%), Positives = 130/147 (88%)
 Frame = +3

Query: 210 YVAFTDTERLIGDAAKNXVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGK 389
           YVAFTDTERLIGDAAKN VAMNP+NTIFDAKRLIGR+F D  VQ+DMKHWPF+V+   GK
Sbjct: 39  YVAFTDTERLIGDAAKNQVAMNPHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGK 98

Query: 390 PXIXVXYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD 569
           P I V +KGE KTF PEE+SSMVL KM+E+AEA+LG  V +AV+TVPAYFNDSQRQATKD
Sbjct: 99  PLIQVEFKGETKTFTPEEISSMVLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKD 158

Query: 570 AGTISGLNVLRIINEPTAAAIAYGLDK 650
           AG I+GLNVLRIINEPTAAAIAYGLD+
Sbjct: 159 AGLIAGLNVLRIINEPTAAAIAYGLDR 185



 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 140 VGVFQHGKVEIIANDQ 187
           VG F + +VEIIANDQ
Sbjct: 16  VGHFSNNRVEIIANDQ 31


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score =  222 bits (542), Expect = 4e-59
 Identities = 104/146 (71%), Positives = 121/146 (82%)
 Frame = +3

Query: 210 YVAFTDTERLIGDAAKNXVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGK 389
           +VAFT+TERL+GDAAKN  AMNP NT+FDAKRLIGR++ED   Q D+KHWPF+V+ + G 
Sbjct: 43  FVAFTETERLVGDAAKNQAAMNPRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGI 102

Query: 390 PXIXVXYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD 569
           P I V Y GE K F  +E+S+MVLTKMKE +EA L K V+ AVITVPAYF+DSQR ATKD
Sbjct: 103 PTIEVNYLGEKKQFTAQEISAMVLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKD 162

Query: 570 AGTISGLNVLRIINEPTAAAIAYGLD 647
           AG I+GLNVLRIINEPTAAAIAYGLD
Sbjct: 163 AGAIAGLNVLRIINEPTAAAIAYGLD 188


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score =  217 bits (530), Expect = 1e-57
 Identities = 99/147 (67%), Positives = 123/147 (83%)
 Frame = +3

Query: 210 YVAFTDTERLIGDAAKNXVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGK 389
           YVAFT+ ERL+G+AAKN    NP NTIFD KRLIGRKF++ T+  D+K +PF +V+D  +
Sbjct: 72  YVAFTEDERLVGEAAKNQAPSNPENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNR 131

Query: 390 PXIXVXYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD 569
           P + V   G+ K F PEE+S+M+L+KMK+TAEAYLGK V +AV+TVPAYFND+QRQATKD
Sbjct: 132 PLVEVNVGGKKKKFTPEEISAMILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKD 191

Query: 570 AGTISGLNVLRIINEPTAAAIAYGLDK 650
           AGTI+GLNV+RI+NEPTAAAIAYGLDK
Sbjct: 192 AGTIAGLNVIRIVNEPTAAAIAYGLDK 218



 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 140 VGVFQHGKVEIIANDQ 187
           V V ++G+VEIIANDQ
Sbjct: 49  VAVMKNGRVEIIANDQ 64


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score =  171 bits (417), Expect = 6e-44
 Identities = 83/147 (56%), Positives = 106/147 (72%), Gaps = 1/147 (0%)
 Frame = +3

Query: 213 VAFT-DTERLIGDAAKNXVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGK 389
           VAFT D ERL+G +AK    +NP NT F  KRLIGR+F++  VQ D+K  P+++V     
Sbjct: 88  VAFTKDGERLVGVSAKRQAVINPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNG 147

Query: 390 PXIXVXYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD 569
                  +   KT+ P ++   +L+KM+ETA  YLGK V+NAV+TVPAYFNDSQRQATK 
Sbjct: 148 D---AWLEARGKTYSPSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKA 204

Query: 570 AGTISGLNVLRIINEPTAAAIAYGLDK 650
           AG I+GLNVLR++NEPTAAA+AYGLDK
Sbjct: 205 AGAIAGLNVLRVVNEPTAAALAYGLDK 231



 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +1

Query: 94  KHPQLGIDLGTTYSXRWCLPAREG 165
           K P +GIDLGTT S   CL   EG
Sbjct: 49  KGPVIGIDLGTTTS---CLAIMEG 69


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 95.5 bits (227), Expect = 6e-21
 Identities = 52/147 (35%), Positives = 84/147 (57%), Gaps = 1/147 (0%)
 Frame = +3

Query: 213 VAFTDTERLIGDAAKNXVAMNPNNTIFDAKRLIGRKFEDATVQ-ADMKHWPFEVVSDGGK 389
           V++ +  R +G+AAK+  A N  NT+   KRL GR ++D  ++  +      ++    G 
Sbjct: 43  VSYGERSRFLGEAAKSAEASNFRNTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGF 102

Query: 390 PXIXVXYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD 569
               V Y  E+  F   ++ +   TK+K  AEA L  +V + VI++PA+F D QR+A  +
Sbjct: 103 VGAKVQYLNEETAFSNIQLIAAYFTKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLE 162

Query: 570 AGTISGLNVLRIINEPTAAAIAYGLDK 650
           A  I+GLN LR++N+  AAA+ YG+ K
Sbjct: 163 AANIAGLNPLRLMNDNAAAALTYGITK 189


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 38/137 (27%), Positives = 72/137 (52%), Gaps = 6/137 (4%)
 Frame = +3

Query: 243 GDAAKNXVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPXIXVXYKGED 422
           G  A+  +  N +N++ + + L+G+  ++ T+     H+    V+  G+    +  + ++
Sbjct: 72  GVQARGQLVRNADNSVTNFRDLLGKSHDELTLHHC--HYSANPVNVEGQIGFKITVQEDE 129

Query: 423 ------KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTIS 584
                 K     E S   L ++ E+AE +LG  V   V++VP YF D+QR+A + A   +
Sbjct: 130 ESDPKEKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEA 189

Query: 585 GLNVLRIINEPTAAAIA 635
           GL VL++I++P A  +A
Sbjct: 190 GLPVLQLIHDPAAVILA 206


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 2/148 (1%)
 Frame = +3

Query: 213 VAFTDTERLIGDAAKNXVAMNPNNTIFDAKRLIGRK-FEDATVQADMKHWPFEVVSDGGK 389
           VAF   ER+ G  A N     P ++I + K L+     E   VQ     +P   + +  +
Sbjct: 61  VAFKGNERIFGVDASNLATRFPAHSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEE 120

Query: 390 PXIXVXYK-GEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 566
               + +   +++ +  EE+ +M +      AE    + + + V+TVP +FN+ QR    
Sbjct: 121 TTSGISFVISDEENYSLEEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILL 180

Query: 567 DAGTISGLNVLRIINEPTAAAIAYGLDK 650
           +A  I   +VL +I++  A AI Y L +
Sbjct: 181 EAARILNKHVLALIDDNVAVAIEYSLSR 208


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +3

Query: 213 VAFTDTERLIGDAAKNXVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSD 380
           + F+D E   GD A     + P   +  AK L+G+  +   +  D    P++V+ D
Sbjct: 125 IIFSDDEPYPGDVASRIYFLVPKFELPRAKELVGKNIDAKYITWDEDENPYQVLYD 180


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 107 SCGCFCHFVFLISL-VTCSLKQLSKRARL 24
           +C CFC + FL+S+    S+ QL  R ++
Sbjct: 383 NCFCFCQYPFLLSMGAKISILQLDARRKM 411


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 34  RLLSCFNEQVTRLIKNTKWQKHPQLGIDLGTTY 132
           ++L  FN Q+  L   T W  H +L  D+ +TY
Sbjct: 462 QVLRIFNVQIEELDAKTPWYYHYELEKDVKSTY 494


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 117 IDS*LRVLLPFCIFNQSCYLFVKTTQQTCAI 25
           ++S   +L PFCI  +   LF KT    C I
Sbjct: 129 VESLANLLPPFCISQKIVNLFFKTLNVVCPI 159


>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 444 VSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 566
           ++  ++ K    A   LGK     +      FN+SQ+QAT+
Sbjct: 57  INEPIVYKSSNNAYIVLGKVTVEDMAAQARAFNESQKQATE 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,545
Number of Sequences: 5004
Number of extensions: 45837
Number of successful extensions: 128
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)