Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_L04
(583 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34242| Best HMM Match : DnaJ (HMM E-Value=9.2e-30) 39 0.003
SB_11933| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_2842| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.010
SB_31961| Best HMM Match : EGF (HMM E-Value=0) 36 0.032
SB_16586| Best HMM Match : DnaJ (HMM E-Value=4.9e-10) 36 0.032
SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32) 33 0.13
SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007) 31 0.52
SB_3343| Best HMM Match : DnaJ (HMM E-Value=0.067) 31 0.52
SB_293| Best HMM Match : DnaJ (HMM E-Value=7.6e-37) 31 0.52
SB_8484| Best HMM Match : Heme_oxygenase (HMM E-Value=0) 31 0.91
SB_41006| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37) 29 2.8
SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_24444| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_34890| Best HMM Match : DnaJ (HMM E-Value=2.7e-37) 28 4.8
SB_16146| Best HMM Match : DnaJ (HMM E-Value=2.7e-37) 28 4.8
SB_31923| Best HMM Match : DnaJ (HMM E-Value=2.8e-38) 28 6.4
SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 6.4
SB_20922| Best HMM Match : RVT_1 (HMM E-Value=0) 27 8.5
SB_21411| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_34242| Best HMM Match : DnaJ (HMM E-Value=9.2e-30)
Length = 238
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +1
Query: 289 TKREAALILGVSPTASKAXIRDAHRKIMLLNHPDR 393
+K+ +LGVSP AS++ I+DA+ K+ + +HPDR
Sbjct: 69 SKKNYYNVLGVSPKASQSKIKDAYYKLSMKHHPDR 103
>SB_11933| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +1
Query: 289 TKREAALILGVSPTASKAXIRDAHRKIMLLNHPDR 393
+K+ +LGVSP AS++ I+DA+ K+ + +HPDR
Sbjct: 69 SKKNYYNVLGVSPKASQSKIKDAYYKLSMKHHPDR 103
>SB_2842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +1
Query: 310 ILGVSPTASKAXIRDAHRKIMLLNHPDR 393
+LGVS TAS++ I+ A+RKI L HPDR
Sbjct: 19 VLGVSKTASESEIKRAYRKISLQVHPDR 46
>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
Length = 2813
Score = 35.5 bits (78), Expect = 0.032
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +1
Query: 310 ILGVSPTASKAXIRDAHRKIMLLNHPDR 393
+LGV TA++A IR A+R+I L HPDR
Sbjct: 2487 VLGVETTATQAEIRRAYRRISLQLHPDR 2514
>SB_16586| Best HMM Match : DnaJ (HMM E-Value=4.9e-10)
Length = 141
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 289 TKREAALILGVSPTASKAXIRDAHRKIMLLNHPDR 393
T +A +LGV PT I+ A+RK+M +HPD+
Sbjct: 72 TLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDK 106
>SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 265 KGGFEPKMTKREAAL-ILGVSPTASKAXIRDAHRKIMLLNHPDR 393
K E K +KR+ IL +S TAS+ I+ A++K L +HPDR
Sbjct: 147 KAKLELKKSKRKDYYKILNISKTASEDEIKKAYKKEALKHHPDR 190
>SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)
Length = 264
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 265 KGGFEPKMTKREAAL-ILGVSPTASKAXIRDAHRKIMLLNHPDR 393
K E K +KR+ IL +S TAS+ I+ A++K L +HPDR
Sbjct: 147 KAKLELKKSKRKDYYKILNISKTASEDEIKKAYKKEALKHHPDR 190
>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 966
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 280 PKMTKREAAL-ILGVSPTASKAXIRDAHRKIMLLNHPDR 393
P M K A IL V PTA+ I+ ++RK+ L HPD+
Sbjct: 58 PIMVKETAYYDILNVPPTATATEIKKSYRKLALKYHPDK 96
>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
Length = 831
Score = 31.5 bits (68), Expect = 0.52
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 310 ILGVSPTASKAXIRDAHRKIMLLNHPDR 393
ILGV P AS I+ +RK+ +L HPD+
Sbjct: 804 ILGVPPEASDDDIKRQYRKLAVLIHPDK 831
>SB_3343| Best HMM Match : DnaJ (HMM E-Value=0.067)
Length = 29
Score = 31.5 bits (68), Expect = 0.52
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 310 ILGVSPTASKAXIRDAHRKIMLLNHPDR 393
ILGV P AS I+ +RK+ +L HPD+
Sbjct: 2 ILGVPPEASDDDIKRQYRKLAVLIHPDK 29
>SB_293| Best HMM Match : DnaJ (HMM E-Value=7.6e-37)
Length = 238
Score = 31.5 bits (68), Expect = 0.52
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 295 REAALILGVSPTASKAXIRDAHRKIMLLNHPDRGWVTPHSSK 420
R+ ILGV ASK I+ A+RK+ + HPD+ P + +
Sbjct: 24 RDFYAILGVPRDASKNQIKRAYRKLAMKLHPDKNKDDPKAQE 65
>SB_8484| Best HMM Match : Heme_oxygenase (HMM E-Value=0)
Length = 820
Score = 30.7 bits (66), Expect = 0.91
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +1
Query: 154 AGRYVLKQMPNASMKFAEXVKNLPKFDSETLANSKYYKGGFEPKMTKREAALILGVSPTA 333
+G +LK+M +MK E + + F + +AN+K +K + ++ K L +S
Sbjct: 647 SGGAILKKMAVKAMKLPETGEGVKFFTFDKVANAKEFKNHYRSRLDK------LDISKDV 700
Query: 334 SKAXIRDAHRKIML 375
S +++A+ ML
Sbjct: 701 SDKLVQEANLAFML 714
>SB_41006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 310 ILGVSPTASKAXIRDAHRKIMLLNHPDRGWVTPHSSKD 423
+LGV A+ IR A+R++ L HPD+ T + K+
Sbjct: 8 VLGVERNATTDDIRRAYRRLALKYHPDKNAGTEENFKE 45
>SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37)
Length = 399
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 310 ILGVSPTASKAXIRDAHRKIMLLNHPDR 393
ILG++ +A+ A I+ +RK+ L HPD+
Sbjct: 8 ILGLTRSATDADIKKEYRKLSLKYHPDK 35
>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/80 (23%), Positives = 38/80 (47%)
Frame = +1
Query: 151 FAGRYVLKQMPNASMKFAEXVKNLPKFDSETLANSKYYKGGFEPKMTKREAALILGVSPT 330
+ R LK NA + + N + ++L +++ K + +++ ILGV P
Sbjct: 15 YCARSALKTAGNAQSRNISTLNNYSRL-RKSLVSARLSKDNLQ----RKDYYKILGVPPN 69
Query: 331 ASKAXIRDAHRKIMLLNHPD 390
A++ I+ A+ ++ HPD
Sbjct: 70 ANQKEIKKAYFELAKKYHPD 89
>SB_24444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 313 LGVSPTASKAXIRDAHRKIMLLNHPDRGWVTPHSSK 420
LG+ A+K I A++K+ +L HPD+ V P S +
Sbjct: 148 LGIQQGATKDDINRAYKKLAVLIHPDKS-VAPGSEE 182
>SB_34890| Best HMM Match : DnaJ (HMM E-Value=2.7e-37)
Length = 386
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 310 ILGVSPTASKAXIRDAHRKIMLLNHPDRGWVTPHSSKD 423
+LGV AS I+ A+RK+ HPD+ T KD
Sbjct: 9 LLGVPQNASDNDIKKAYRKLAKELHPDKNPDTGEKFKD 46
>SB_16146| Best HMM Match : DnaJ (HMM E-Value=2.7e-37)
Length = 79
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 310 ILGVSPTASKAXIRDAHRKIMLLNHPDRGWVTPHSSKD 423
+LGV AS I+ A+RK+ HPD+ T KD
Sbjct: 9 LLGVPQNASDNDIKKAYRKLAKELHPDKNPDTGEKFKD 46
>SB_31923| Best HMM Match : DnaJ (HMM E-Value=2.8e-38)
Length = 161
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 310 ILGVSPTASKAXIRDAHRKIMLLNHPDR 393
ILGV AS I+ A+R+ L+ HPD+
Sbjct: 8 ILGVPRNASDDDIKKAYRRQALIFHPDK 35
>SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 795
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +1
Query: 166 VLKQMPNASMKFAEXVKNLPKFDSETL 246
+ KQ PN S++F+E +++ K+ +E+L
Sbjct: 382 LFKQSPNISLQFSETIESSSKWPAESL 408
>SB_20922| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 576
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 310 ILGVSPTASKAXIRDAHRKIMLLNHPDR 393
ILGV AS I+ A RK+ + HPD+
Sbjct: 30 ILGVPRNASDKQIKKAFRKMAVKYHPDK 57
>SB_21411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 292 KREAALILGVSPTASKAXIRDAHRKIMLLNHPD 390
KR+ ILG+ +K I A+RK+ + HPD
Sbjct: 206 KRDYYKILGLKRNCNKREITKAYRKLAVKWHPD 238
>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4085
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 153 RRTICSKANAKRFNEICRXSEEFT 224
+ ++CS+ RFN+ + SEEFT
Sbjct: 89 KSSVCSRKRDLRFNDFIQESEEFT 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,601,300
Number of Sequences: 59808
Number of extensions: 278985
Number of successful extensions: 535
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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