Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_L01
(467 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 98 7e-22
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 55 5e-09
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 54 1e-08
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 52 6e-08
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 50 2e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 47 2e-06
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 44 1e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 42 6e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 41 8e-05
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 41 1e-04
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 41 1e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 40 2e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 39 4e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 6e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 37 0.001
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 36 0.002
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 36 0.002
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 36 0.003
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 36 0.004
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 35 0.007
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 35 0.007
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.012
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 32 0.038
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 32 0.050
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 31 0.088
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 29 0.27
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.27
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 29 0.35
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 28 0.82
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 1.4
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 3.3
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 3.3
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 25 4.4
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch... 25 5.8
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 5.8
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 25 7.6
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 7.6
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 97.9 bits (233), Expect = 7e-22
Identities = 40/80 (50%), Positives = 62/80 (77%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
K+FIGGL++ TTD SL++++EQ+GE++ VM+D T RS+GFGF+T+ V+E +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-S 222
Query: 389 RPHKIDGRIVEPKRAVPREE 448
+ H +DG+I++PKRA+PREE
Sbjct: 223 KEHHLDGKIIDPKRAIPREE 242
Score = 70.5 bits (165), Expect = 1e-13
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHM 367
EE E T K+F+GG+ T+ + F+ Q+G ++ +M D T R +GFGF+TY
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESA 300
Query: 368 VDEAQNNRPH-KIDGRIVEPKRAVPREEIK 454
V EA ++P+ I G+ VE KRA P+ ++
Sbjct: 301 V-EATMSQPYITIHGKPVEVKRATPKASLR 329
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 55.2 bits (127), Expect = 5e-09
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN- 388
LF+ G+ R + L++ + ++G + HV +M++P TK S+GFGF+++S A +N
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 389 RPHKIDGRIVEPKRA 433
+ GR++ ++A
Sbjct: 163 NSQEFYGRVLNVQKA 177
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 53.6 bits (123), Expect = 1e-08
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN- 388
LF+ L ++T L F+ G I H VV+ +P+T ++G+GF+T+S A
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 389 RPHKIDGRIVEPKRAVPRE 445
+ K+ GRI+ A PR+
Sbjct: 67 KNKKLHGRILRLDFATPRK 85
Score = 38.3 bits (85), Expect = 6e-04
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITY 352
+F+ L + T+ L + Q+G + + ++KDP T RS G GFI +
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 51.6 bits (118), Expect = 6e-08
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +2
Query: 161 KPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFG 340
+P++ ++ T +F+G L + D L + +E++G IV V+ D ++ RSKG+G
Sbjct: 248 RPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYG 307
Query: 341 FITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPREEIKRPXA 466
++ + A N +IDGR+V + PR +P A
Sbjct: 308 YVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYA 350
Score = 51.2 bits (117), Expect = 8e-08
Identities = 27/89 (30%), Positives = 42/89 (47%)
Frame = +2
Query: 176 GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYS 355
GD EP T +F+G L + T+ L + G+I + + DP++ R KGFG++T+S
Sbjct: 358 GDQLSEPSDT--VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS 415
Query: 356 QAHMVDEAQNNRPHKIDGRIVEPKRAVPR 442
+ H I GR + PR
Sbjct: 416 DIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 49.6 bits (113), Expect = 2e-07
Identities = 22/47 (46%), Positives = 31/47 (65%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITY 352
LF+G LD+ TTD+ LKE + Q G+I V +M T + KGFGF+ +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 46.8 bits (106), Expect = 2e-06
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +2
Query: 194 PEHTRK-LFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHMV 370
P+ T++ +F+G L + + L ++ G I +V +++DPKT KGF +I + V
Sbjct: 265 PQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGV 324
Query: 371 DEAQNNRPHKI-DGRIVEPKRA 433
D+A K+ +GR + RA
Sbjct: 325 DKALLLNEKKMPEGRTLRIMRA 346
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 44.0 bits (99), Expect = 1e-05
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Frame = +2
Query: 218 IGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH 397
+G L + T++ L +F+ + + +V+ DP T+RS+GFG++ + A + A
Sbjct: 98 VGNLSFDLTENDLGDFFGEGVTSIRLVI--DPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 398 KIDGR-----IVEPKRAVPREE 448
+ GR + EP+R+ REE
Sbjct: 156 DLMGRPVRITVAEPRRSFAREE 177
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 41.5 bits (93), Expect = 6e-05
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +2
Query: 170 ESGDDY--EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGF 343
ESGD E + + L + L T + L++ + ++G I V + KD +T R+KGF F
Sbjct: 188 ESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAF 247
Query: 344 ITY 352
++Y
Sbjct: 248 VSY 250
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 41.1 bits (92), Expect = 8e-05
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Frame = +2
Query: 161 KPSESG--DDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKG 334
KP S DY + + ++IG LD+ + + + ++GE V + +++D +T +SKG
Sbjct: 17 KPFSSSWHQDYSDSAY---IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKG 73
Query: 335 FGFITYSQAHMVDEAQNNRPH-KIDGRIV 418
F F+ Y A +N + K+ R+V
Sbjct: 74 FAFLKYEDQRSTVLAVDNMTNVKLLDRLV 102
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 40.7 bits (91), Expect = 1e-04
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHM 367
+E + +++G +DY T L+ + G + V ++ D T KGF +I +S+ +
Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSL 108
Query: 368 VDEA 379
V A
Sbjct: 109 VPNA 112
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 40.7 bits (91), Expect = 1e-04
Identities = 16/84 (19%), Positives = 45/84 (53%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
R+L++ +D++ + ++ F+ +G++ V + K + + KGFG++ + + A +
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPK--RFNQHKGFGYVVMTTNQDAENALS 814
Query: 386 NRPHKIDGRIVEPKRAVPREEIKR 457
++ R++ + PRE +++
Sbjct: 815 AAGKQLGNRVLNVVLSKPRESLEK 838
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 39.9 bits (89), Expect = 2e-04
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +2
Query: 161 KPSESGDDYEEPEHTRK-LFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGF 337
+P E E E R+ +F+ L R T L +F+EQ G + +++D + RSKG
Sbjct: 224 RPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGV 283
Query: 338 GFITYSQAHMVDEA 379
++ + V A
Sbjct: 284 AYVEFCHEDSVQAA 297
Score = 39.5 bits (88), Expect = 2e-04
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITY 352
E P H +L + + + TD +K +E +G+I V + +D + RSKGFG+I Y
Sbjct: 336 EIPFH--RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQY 387
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 38.7 bits (86), Expect = 4e-04
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHM 367
E+ +++G LD + TDS L E Q G +V++ + +D GFGF +
Sbjct: 5 EDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQD 64
Query: 368 VDEA-QNNRPHKIDGRIVEPKRA 433
V+ A Q K+ G+ + RA
Sbjct: 65 VEYACQILNQVKLFGKPIRVNRA 87
Score = 38.3 bits (85), Expect = 6e-04
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHMVD---EAQ 382
LF+G LD + L + + G++V + + RSKG+GF++Y D EA
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 383 NNR 391
NN+
Sbjct: 161 NNQ 163
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 38.3 bits (85), Expect = 6e-04
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
++I LD T+ + + Q+GEI + ++KD K +GFGF+ Y+ +A
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK-PRGFGFVNYANHECAQKA 317
Score = 36.7 bits (81), Expect = 0.002
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
LFI L D LK + +G I +M D + K SKGFGF+ Y+ ++A
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKA 420
Score = 36.3 bits (80), Expect = 0.002
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITY 352
L++G LD T++ L E + G + + V +D T+RS G+ ++ +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNF 128
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 37.1 bits (82), Expect = 0.001
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +2
Query: 173 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITY 352
+G Y + E R++++G L Y+ LKEF Q G +++ ++ P SKG I Y
Sbjct: 57 NGQKYTQQE--RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP-NGLSKGCAIIEY 113
Query: 353 SQAHMVDEA-QNNRPHKIDGRIV 418
S A A + K GR+V
Sbjct: 114 STAEEARTAIKTLSNQKFMGRLV 136
Score = 35.9 bits (79), Expect = 0.003
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITY 352
+++G L + T+D +L + + G ++ + +P T RSKGFG + +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQF 327
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 36.3 bits (80), Expect = 0.002
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSL----KEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
LF+ L+ ++ L K++++QWG ++HV V+KD + + F+ + +A
Sbjct: 81 LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKD---WLQRPYSFVQFQNTDDASKA 137
Query: 380 QNNRPHKI-DGRIVEPKRAVPREEIK 454
+ + I DGR + +RA I+
Sbjct: 138 LSEAQNTILDGRHIRIERAKVNRTIR 163
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 36.3 bits (80), Expect = 0.002
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITY 352
+F+G + Y ++ + E + Q G + ++ DP+T KG+GF +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 35.9 bits (79), Expect = 0.003
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +2
Query: 158 MKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGF 337
M + E TR ++I GL T+D +L + ++G++ + D +T KG+
Sbjct: 280 MSHDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGY 339
Query: 338 GFITYSQ 358
GF + +
Sbjct: 340 GFACFEE 346
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 35.5 bits (78), Expect = 0.004
Identities = 18/83 (21%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQ---AHMVDEAQ 382
L++G L + + ++ ++ Q+G ++ + + ++ KT SK + FI + A++V E
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 383 NNRPHKIDGRIVEPKRAVPREEI 451
+N + + G++++ K +P +++
Sbjct: 167 HN--YLLYGKLLQCK-VIPEDQV 186
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.7 bits (76), Expect = 0.007
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 212 LFIGGLDYRTTDSS--LKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
LF+ LD ++ L+E + ++G I + P T+ SKG+GF+++S +A N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 34.7 bits (76), Expect = 0.007
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNN 388
+++G L + TT+ + + + GEI +++ D TK GF F+ Y +D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 389 RPHKIDGRIV 418
+D RI+
Sbjct: 94 SRTSLDERII 103
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 33.9 bits (74), Expect = 0.012
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
+++G + Y + + + ++Q G + ++ DP++ + KG+GF Y A N
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 32.3 bits (70), Expect = 0.038
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
+F+GGL ++ LK ++ +GEIV+V K KG GF+ + + A N
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYV------KIPPGKGCGFVQFVNRQSAEIAIN 356
Score = 29.1 bits (62), Expect = 0.35
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKE-FYEQWGEIVHVVVMKDPKTKRSKGFGFITYS 355
+F+G L + + F ++ +M DP+T S+G+GF+ ++
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFT 236
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 31.9 bits (69), Expect = 0.050
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 194 PEHTRKLFIGGLDYR--TTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHM 367
P L++ LD T S L++ + +G I+ ++ P + SKG+GF+ + Q
Sbjct: 378 PIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA 437
Query: 368 VDEAQNNRPHKIDGRIVEPKR 430
A++ ++G +V KR
Sbjct: 438 AVRAKDT----LNGMMVGKKR 454
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 31.1 bits (67), Expect = 0.088
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
+F+GGL ++ L+ ++ +G I+++ K KG GF+ YS+ ++A N
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNI------KIPFGKGCGFVQYSEKSAAEKAIN 350
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 29.5 bits (63), Expect = 0.27
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 203 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVHV 295
+R ++IG D T LKE +E++GEI +V
Sbjct: 413 SRNIYIGNADDSLTIERLKEDFEEFGEIEYV 443
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 29.5 bits (63), Expect = 0.27
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITY 352
LF+G L ++ +L+ +++ G++ V + D + R KG+ F+ +
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.1 bits (62), Expect = 0.35
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Frame = +2
Query: 173 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEI-VHVVVMKDP-----------K 316
SG + +P +++ GL T+ LKE ++ + + V P +
Sbjct: 194 SGKNKAKPLPPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGE 253
Query: 317 TKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI-VEPKRAVPREE 448
+R +GFGF++++ A A K G + + K AV RE+
Sbjct: 254 QRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRED 298
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.9 bits (59), Expect = 0.82
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
+LF+G + + T + +F++ +G+I+ +M GFGF+ A + N+
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVND 56
Query: 389 RPHK--IDGRI-VEPKRAVPR 442
K + RI VEP R R
Sbjct: 57 FQGKEFMGSRIVVEPARGERR 77
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.1 bits (57), Expect = 1.4
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
R L++ G L +E +G ++ + P+T+ S+ F F+ Y + ++A
Sbjct: 7 RTLYVTGFRDGMRARELAYEFEPFGPLIRCDI-PIPRTRTSRPFAFVEYEDSRDAEDAY- 64
Query: 386 NRPHKIDGRIVEPKRAVPREE-IKRP 460
+++ GR +E V R E K+P
Sbjct: 65 ---YEVHGRRLERGGGVLRVEWAKQP 87
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 3.3
Identities = 8/34 (23%), Positives = 21/34 (61%)
Frame = +2
Query: 200 HTRKLFIGGLDYRTTDSSLKEFYEQWGEIVHVVV 301
++R LF+GG+ + L+ +E++G + +++
Sbjct: 404 YSRTLFLGGITRSVREPVLRSMFERFGSVQSLIL 437
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.8 bits (54), Expect = 3.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 164 PSESGDDYEEPEHTRKLFI 220
PS G YEEPEHTR +I
Sbjct: 76 PSADGG-YEEPEHTRLSYI 93
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/55 (21%), Positives = 28/55 (50%)
Frame = +2
Query: 239 TTDSSLKEFYEQWGEIVHVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI 403
T+D+ + + +Q E ++ +P T +S + +A+ D++ +N P K+
Sbjct: 328 TSDNEVADIDDQMIERKYLFSASEPNTVKSTNRLIFSERKAYAADDSIDNTPSKV 382
>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 445
Score = 25.0 bits (52), Expect = 5.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 170 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKE 262
+ GD + R LF YRT DSS+K+
Sbjct: 353 QQGDSFPSLPEIRALFKDCKFYRTIDSSIKD 383
>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 98
Score = 25.0 bits (52), Expect = 5.8
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 94 LKSNFLIDY*HLRTSSLVNIKYEAFGKR 177
LK NFL+ +R SSLV+I+Y F R
Sbjct: 16 LKKNFLLT---IRFSSLVSIQYIPFSNR 40
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 24.6 bits (51), Expect = 7.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 245 DSSLKEFYEQWGEIVHVVVMKDPKTKRSK 331
D +KE + E++ V + DP+TK+SK
Sbjct: 136 DKKVKELEKIQKELLVVYELPDPETKKSK 164
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 24.6 bits (51), Expect = 7.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 180 MTMKNLNTHVNFLSVDSTIEPQILH*KNSMSNGEKLY 290
+T+ NL VN+L D P++ S+++ ++LY
Sbjct: 1069 LTINNLEEKVNYLEADVKQLPKLKKELESLNDKDQLY 1105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,097
Number of Sequences: 5004
Number of extensions: 39244
Number of successful extensions: 147
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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