Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_K22
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   1.8  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    27   1.8  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    26   4.1  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.5  
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   5.5  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    26   5.5  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   7.2  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    25   7.2  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 443  AVVDVEFGFDVIHQIQDVFDDRLLLCLDHFVH-LFDXNFGLGIDLGR 306
            A VDVE    V   I++ F+DR +L + H ++ + D N  L +D G+
Sbjct: 1389 AAVDVETDAIVQRTIRERFNDRTILTIAHRINTVMDSNRILVLDHGK 1435


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 198 SRPRRRLKMKLKSTDRSVKGS-SKNLKPSTWVPAQGVAAKIDAETKVXIEEMNKMVQTQK 374
           +RP R         D S+  S SK+ K    V A  +  + D+E +  +EE+ + ++  +
Sbjct: 71  NRPFRTNSSSFSPNDYSISESPSKSKKDGVHVSAVQLDNETDSEVESEVEELERELEAIE 130

Query: 375 EAVIKDV 395
           ++V  +V
Sbjct: 131 DSVYPEV 137


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 100 GESDPRNPTASSC*KTRCGESQRGKEAKSKTPKAGQGGGSR*S*KVQTG 246
           GES+  N T++S  K R     + K+AK +T K+G    +  S K+  G
Sbjct: 297 GESNKDNNTSTSKHKKRPKRLSKFKQAKLETKKSGNKDHATSSEKLSLG 345


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 427 SSGLMSYTRFKTSLMTASFCVWTILFISSXLTLVSASILA 308
           SSGL+     K     +S   + +L I S LTLV +S ++
Sbjct: 732 SSGLLELIALKIGNAVSSLNTFRVLLIFSALTLVVSSFIS 771


>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +3

Query: 219 KMKLKSTDRSVKGSSKNLKPSTWVPAQGVAAKIDAETKVXIEEMNKMVQTQKEAVIKDV 395
           K K K  ++  +  +   +P+  VP+   ++ I  ET   IE    +   +   +IKDV
Sbjct: 120 KDKKKEVNKLEEKMTNAKEPNVNVPSMKASSAISVETPETIESEASVDHKEASKIIKDV 178


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 121 DSLGLTRHIENTQKLCRPRPSXENRDTNQIKR 26
           D+L LT        LC   P  E  D+N I++
Sbjct: 151 DTLSLTEKFSRFMSLCETYPELELMDSNNIQK 182


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 103  ESDPRNPTASSC*KTRCGESQRGKEAKSKTPKAGQGGG 216
            E+DP+NP A S      G +   +++K++ PK     G
Sbjct: 1284 ENDPKNPKAGS---QGSGNTSASEDSKTEKPKTRTNNG 1318


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 410 IHQIQDVFDDRLLLCLDHFVHLFDXNFGLGIDLGRNTLRWYPCAWL 273
           +H I+D  +   LL   HF++L   ++ +  DL    +   PC +L
Sbjct: 28  LHAIEDSNESLYLLAYSHFLNL---DYNIVYDLLDRVISHVPCTYL 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,822
Number of Sequences: 5004
Number of extensions: 37595
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)