Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_K22
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     29   3.2  
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    29   4.3  
06_03_0505 + 21545547-21545813,21546075-21546167,21546535-215467...    28   5.6  
12_02_0500 + 19735879-19736144,19736325-19736664,19738181-19738831     27   9.9  

>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/53 (26%), Positives = 32/53 (60%)
 Frame = +3

Query: 234  STDRSVKGSSKNLKPSTWVPAQGVAAKIDAETKVXIEEMNKMVQTQKEAVIKD 392
            S+ R+V+  + +L+  T+   +  AAK++ + +   +E +KMV  + E+ +K+
Sbjct: 3054 SSPRNVEVEAVDLRDETFYIGETKAAKLEEKNETNTKEDDKMVLVEVESPVKN 3106



 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 234  STDRSVKGSSKNLKPSTWVPAQGVAAKIDAETKVXIEEMNKMVQTQKEAVIK 389
            ST   V+  + NL+  T+   +  AAK+D E K   E ++ ++  + +  +K
Sbjct: 4648 STSSDVEVEAVNLRDDTFHIRESTAAKLDDENKTNTENISVVMPNKLQKDVK 4699


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 242 VCTFQLHLEPPPWPALGVLLFASL 171
           V  FQ  + PPPWPA G   F  +
Sbjct: 231 VAAFQSRMMPPPWPARGKAEFGDV 254


>06_03_0505 +
           21545547-21545813,21546075-21546167,21546535-21546747,
           21548933-21549124,21549217-21550197
          Length = 581

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 308 RNTLRWYPCAWLQIL*TAFHAPVCTFQLHLEPPPWPALGVLLFASLPR 165
           RNT   +P  W  I   A +  V  F  H+EP     +GV+   ++ R
Sbjct: 508 RNTAVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDR 555


>12_02_0500 + 19735879-19736144,19736325-19736664,19738181-19738831
          Length = 418

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 103 ESDPRNPTASSC*KTRCG-ESQRGKEAKSKTPK 198
           E    +PT SSC   +CG    + K+ K+KT K
Sbjct: 9   EETMASPTTSSCGTCKCGANDDKAKKMKTKTKK 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,057,301
Number of Sequences: 37544
Number of extensions: 250718
Number of successful extensions: 621
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)