Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_K22
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpa...    45   5e-05
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    28   5.0  
AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear recep...    28   5.0  
AC087232-1|AAK09079.2|  574|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpase
           protein 10 protein.
          Length = 126

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 21/23 (91%), Positives = 23/23 (100%)
 Frame = +2

Query: 98  MASQTQGIQQLLAAEKRAAEKVS 166
           MASQTQGIQQLLAAEKRAAEK++
Sbjct: 1   MASQTQGIQQLLAAEKRAAEKIN 23



 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 22/50 (44%), Positives = 30/50 (60%)
 Frame = +3

Query: 297 QGVAAKIDAETKVXIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRL 446
           + + +KI  +T+  I  M + V   K+AVI  +L LV DIKPELH N  L
Sbjct: 67  EDIESKIRRDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTL 116


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +3

Query: 18  SSYRFI*FVSRFSXLGLGLHSFCVFSIWRVRPKESNSF*LLKNALRR 158
           SS+RF+  V + S +  GL ++CV   W ++ KES S   L +A RR
Sbjct: 676 SSFRFLPQVDKRSVVKRGLFNYCVVK-W-MQHKESMSIDGLSDAARR 720


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +3

Query: 18  SSYRFI*FVSRFSXLGLGLHSFCVFSIWRVRPKESNSF*LLKNALRR 158
           SS+RF+  V + S +  GL ++CV   W ++ KES S   L +A RR
Sbjct: 639 SSFRFLPQVDKRSVVKRGLFNYCVVK-W-MQHKESMSIDGLSDAARR 683


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +3

Query: 18  SSYRFI*FVSRFSXLGLGLHSFCVFSIWRVRPKESNSF*LLKNALRR 158
           SS+RF+  V + S +  GL ++CV   W ++ KES S   L +A RR
Sbjct: 676 SSFRFLPQVDKRSVVKRGLFNYCVVK-W-MQHKESMSIDGLSDAARR 720


>AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 519

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +3

Query: 18  SSYRFI*FVSRFSXLGLGLHSFCVFSIWRVRPKESNSF*LLKNALRR 158
           SS+RF+  V + S +  GL ++CV   W ++ KES S   L +A RR
Sbjct: 378 SSFRFLPQVDKRSVVKRGLFNYCVVK-W-MQHKESMSIDGLSDAARR 422


>AC087232-1|AAK09079.2|  574|Caenorhabditis elegans Hypothetical
           protein Y92H12BR.7 protein.
          Length = 574

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 294 AQGVAAKIDAETKVXIEEMNKMVQTQKEAVIKDVLNLVYD 413
           AQ +A K+D E    ++ MNK V  +K A +  +   + D
Sbjct: 514 AQELAEKLDPELVKAVDHMNKAVAREKNASMTSIFRNLND 553


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,069,172
Number of Sequences: 27780
Number of extensions: 209884
Number of successful extensions: 545
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)