Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_K17
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.02c |||Par A family ATPase iron cluster assembly protein...   159   3e-40
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...   153   2e-38
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    28   1.3  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    26   5.2  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   9.1  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    25   9.1  

>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score =  159 bits (386), Expect = 3e-40
 Identities = 81/160 (50%), Positives = 109/160 (68%), Gaps = 14/160 (8%)
 Frame = +3

Query: 195 QLALTLKE-----RGYKVGLLXIXLCGPSVPYIL--NLEGHDVHXSAEGWVPVYMDSEQR 353
           QLAL+L +     R  K G+L I L GPS+P +   + E + +H S+ GWVPVY D  + 
Sbjct: 25  QLALSLHDSKVYSRPLKTGILDIDLTGPSIPRMFGKDAERNRIHQSSAGWVPVYTDETKE 84

Query: 354 LGVLSIGFLLTSRNDSVVLRGPKKTSIIKQFLQXVYWQELXFLVIDTPPGTSDEHITVMX 533
           +G++S+GFLLTS+NDSVV RGPKK ++I+QF+  V W EL FL+IDTPPGT DEH+T++ 
Sbjct: 85  IGLMSLGFLLTSKNDSVVWRGPKKAAMIRQFISDVSWGELDFLIIDTPPGTGDEHLTIVE 144

Query: 534 NL-------RQVPQCSAILVTTPQEVAIXXVRKEITFCTK 632
           +L       R VP   A++VTTPQ +A   V+KEI FC K
Sbjct: 145 SLLSETSTVRDVPIDGAVIVTTPQGIATLDVQKEIDFCKK 184


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score =  153 bits (372), Expect = 2e-38
 Identities = 71/147 (48%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
 Frame = +3

Query: 195 QLALTLK-ERGYKVGLLXIXLCGPSVPYILNLEGHDVHXSAEGWVPVYMDSEQRLGVLSI 371
           QLA  L  E   ++GL+ + +CGPS+P I+ +E  + H S++GW P+Y+     L V+SI
Sbjct: 80  QLAWGLSLEEDKQIGLMDVDICGPSIPRIMGVEKEEAHQSSKGWSPIYVCPN--LAVMSI 137

Query: 372 GFLLTSRNDSVVLRGPKKTSIIKQFLQXVYWQELXFLVIDTPPGTSDEHITVMXNLRQVP 551
           GFLL S + SV+ RGPKK  +IKQF++ V W+ L +L++DTPPGTSDEH++++   +   
Sbjct: 138 GFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDYLIVDTPPGTSDEHLSLVQFFKNSG 197

Query: 552 QCSAILVTTPQEVAIXXVRKEITFCTK 632
              A++VTTPQEVA+  VRKEI FC K
Sbjct: 198 IDGAVVVTTPQEVALQDVRKEIDFCRK 224


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 365  VDWIPTNIS**FCCIKGTKKDFHNQTVPTXCLLARAXL 478
            V W+PT+IS    C++G    F+ +++   C +  + L
Sbjct: 1228 VRWVPTDISGKPLCLRGRISSFYRKSIHKKCRVGSSLL 1265


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 468 ELXFLVIDTPPGTSDEHI 521
           ++ FL++DTP   +DEH+
Sbjct: 538 DILFLILDTPSRETDEHL 555


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 465 QELXFLVIDTPPGTSDEHITVMXNLRQVPQCSAILVTTPQEVAI 596
           QE   L    PP      I V   L+ +P  ++ L+TTP++  +
Sbjct: 246 QEFDELAKTLPPYHRKNLILVRRCLKMLPDDASALITTPEDAML 289


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -3

Query: 450 VGTV*LWKSFLVPLIQQNHYEMLVGIQSTGHRASVRCPCK--LVPNLQRXGGHHGLR 286
           + T+  WK++   LIQ + +E+ + + S  H     C  +    P +     H G R
Sbjct: 246 IKTIDNWKNYPNALIQISDFELSIFVDSKNHLVQSSCGSQEYAPPEVYMGIAHDGFR 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,983
Number of Sequences: 5004
Number of extensions: 45232
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)