Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_K17
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842 168 4e-42
04_04_0299 - 24243364-24244259,24244417-24244428,24245092-242451... 167 5e-42
01_06_0521 + 30001662-30001752,30001883-30001999,30002099-300022... 79 3e-15
03_05_0387 + 23708447-23708470,23708616-23708739,23709081-237092... 64 9e-11
01_01_0430 + 3258438-3259200,3259929-3261454 29 2.3
02_05_0444 - 29073740-29073844,29074417-29074725,29077910-290779... 29 3.1
09_03_0056 - 11936264-11939677 29 4.1
>02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842
Length = 355
Score = 168 bits (408), Expect = 4e-42
Identities = 78/146 (53%), Positives = 106/146 (72%)
Frame = +3
Query: 195 QLALTLKERGYKVGLLXIXLCGPSVPYILNLEGHDVHXSAEGWVPVYMDSEQRLGVLSIG 374
QL+ L E +VGLL I +CGPS+P +L LEG D+H S GW PVY++S LGV+SIG
Sbjct: 89 QLSFALAEMDCQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESN--LGVMSIG 146
Query: 375 FLLTSRNDSVVLRGPKKTSIIKQFLQXVYWQELXFLVIDTPPGTSDEHITVMXNLRQVPQ 554
F+L + +D+V+ RGP+K +IKQFL+ V W E+ +LV+D PPGTSDEHI+++ L+
Sbjct: 147 FMLPNPDDAVIWRGPRKNGLIKQFLKDVDWGEIDYLVVDAPPGTSDEHISIVQYLQATGI 206
Query: 555 CSAILVTTPQEVAIXXVRKEITFCTK 632
AI+VTTPQ+V++ VRKEI FC K
Sbjct: 207 DGAIIVTTPQQVSLIDVRKEINFCKK 232
>04_04_0299 -
24243364-24244259,24244417-24244428,24245092-24245193,
24245298-24245340
Length = 350
Score = 167 bits (407), Expect = 5e-42
Identities = 77/146 (52%), Positives = 107/146 (73%)
Frame = +3
Query: 195 QLALTLKERGYKVGLLXIXLCGPSVPYILNLEGHDVHXSAEGWVPVYMDSEQRLGVLSIG 374
QL+ L E ++VGLL I +CGPS+P +L LEG D+H S GW PVY++S LGV+SIG
Sbjct: 85 QLSFALAEMDHQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESN--LGVMSIG 142
Query: 375 FLLTSRNDSVVLRGPKKTSIIKQFLQXVYWQELXFLVIDTPPGTSDEHITVMXNLRQVPQ 554
F+L + +D+V+ RGP+K +IKQFL+ V W E+ +LV+D PPGTSDEHI+++ L+
Sbjct: 143 FMLPNPDDAVIWRGPRKNGLIKQFLKDVDWGEIDYLVVDAPPGTSDEHISIVQYLQIAGI 202
Query: 555 CSAILVTTPQEVAIXXVRKEITFCTK 632
AI+VTTPQ+V++ V+KEI FC K
Sbjct: 203 DGAIIVTTPQQVSLIDVKKEINFCKK 228
>01_06_0521 +
30001662-30001752,30001883-30001999,30002099-30002229,
30002320-30002370,30002639-30002689,30002864-30003007,
30003082-30003224,30003376-30003448,30003540-30003635,
30003737-30003835,30003905-30003958,30004032-30004155,
30004420-30004544,30004720-30004842,30004948-30005028
Length = 500
Score = 79.0 bits (186), Expect = 3e-15
Identities = 49/145 (33%), Positives = 78/145 (53%)
Frame = +3
Query: 198 LALTLKERGYKVGLLXIXLCGPSVPYILNLEGHDVHXSAEGWVPVYMDSEQRLGVLSIGF 377
LA TL G +VG+ + GPS+P +++ E + + E + +E LGV + F
Sbjct: 159 LAYTLAGMGARVGIFDADVFGPSLPTMVSPENRLLVMNPES--RSILPTEY-LGVKMVSF 215
Query: 378 LLTSRNDSVVLRGPKKTSIIKQFLQXVYWQELXFLVIDTPPGTSDEHITVMXNLRQVPQC 557
+ ++ +RGP + +I Q L W EL +LVID PPGT D H+T+ + P
Sbjct: 216 GFAGQGRAI-MRGPMVSGVINQLLTTTDWGELDYLVIDMPPGTGDIHLTLCQVV--APLT 272
Query: 558 SAILVTTPQEVAIXXVRKEITFCTK 632
+A++VTTPQ++A V K + +K
Sbjct: 273 AAVIVTTPQKLAFIDVAKGVRMFSK 297
>03_05_0387 +
23708447-23708470,23708616-23708739,23709081-23709203,
23710723-23710820,23711778-23711918,23712236-23712361,
23713316-23713486
Length = 268
Score = 64.1 bits (149), Expect = 9e-11
Identities = 36/105 (34%), Positives = 55/105 (52%)
Frame = +3
Query: 228 KVGLLXIXLCGPSVPYILNLEGHDVHXSAEGWVPVYMDSEQRLGVLSIGFLLTSRNDSVV 407
KVGLL + GPS+P ++NL +PV + +SIGFL+ ++ +V
Sbjct: 63 KVGLLDADIYGPSIPTMMNLHAKPEVSEDMRMIPV---DNYGVQCMSIGFLV-DKDAPIV 118
Query: 408 LRGPKKTSIIKQFLQXVYWQELXFLVIDTPPGTSDEHITVMXNLR 542
RGP S +++ + V W L LV+D PPGT D +++ LR
Sbjct: 119 WRGPMVMSALEKITRGVAWGNLDILVVDMPPGTGDAQLSMSQRLR 163
>01_01_0430 + 3258438-3259200,3259929-3261454
Length = 762
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +3
Query: 315 EGWVPVYMDSEQRLGVLSIGFLLTSRNDSVVLRGPK 422
EGW ++S + VLS+ F S NDSVV R PK
Sbjct: 230 EGWCNALVNSTPKDQVLSLPFCKISVNDSVV-RSPK 264
>02_05_0444 -
29073740-29073844,29074417-29074725,29077910-29077981,
29078541-29078633,29078825-29078982,29079247-29079415,
29080204-29081241,29081632-29081759,29081926-29081985,
29082033-29083077
Length = 1058
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 480 LVIDTPPGTSDEHITVMXNLRQVPQCSAILVTTPQEVAI 596
L+I PPGT + +R V Q +LVT P A+
Sbjct: 491 LIIQGPPGTGKTVLLTELIVRAVQQGENVLVTAPSNAAV 529
>09_03_0056 - 11936264-11939677
Length = 1137
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 456 VYWQELXFLVIDTPPGTSDEHITVMXNLRQVPQCSAILVTTPQEVAI 596
+Y Q++ + +D PG + + + NLR + S + T +E A+
Sbjct: 816 IYLQDMPYYAVDDTPGRGIQELKNLNNLRGALEISGLHNVTSKEQAV 862
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,796,027
Number of Sequences: 37544
Number of extensions: 276745
Number of successful extensions: 478
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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