Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_K15
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 118 6e-28
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 117 8e-28
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 29 0.48
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc... 26 2.5
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 25 4.5
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 4.5
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 25 5.9
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 25 7.8
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 7.8
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 118 bits (283), Expect = 6e-28
Identities = 57/89 (64%), Positives = 68/89 (76%)
Frame = +1
Query: 130 LXFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEXERERRDNYV 309
L F TNKRI +E+AII +K LRNKIAG+ THLM+R++ VRGIS KLQE ERER+D YV
Sbjct: 26 LDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYV 85
Query: 310 PEVSALEHDIIEVXPDTXDMLKMLDFNNI 396
PEVS LE D I V DT DMLK L +++I
Sbjct: 86 PEVSELEKDKINVDQDTKDMLKALGYDSI 114
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 117 bits (282), Expect = 8e-28
Identities = 59/100 (59%), Positives = 73/100 (73%)
Frame = +1
Query: 130 LXFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEXERERRDNYV 309
L F TNKRI +E+AII +K LRNKIAG+ THLM+R++ VRGIS KLQE ERER+D YV
Sbjct: 26 LDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYV 85
Query: 310 PEVSALEHDIIEVXPDTXDMLKMLDFNNINGLQLTQPATQ 429
PEVS LE D + V DT DMLK L ++ I +++ PA Q
Sbjct: 86 PEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQ 124
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 28.7 bits (61), Expect = 0.48
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -3
Query: 408 LQAINIVEVQHLQHIXGVGVYFDDVMFESRHFWDIVVTPLTLLFL-KFDR-DSSHL 247
L+ NI+E +++ + +YF+ M + +FW I P +L KF + ++SHL
Sbjct: 368 LEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWMLARPKFSQINTSHL 423
>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 302
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 116 YKINTXILIQIKEYVKKSLSFLPSLLGIKLLD 211
YK+N +I++K+ + KSL F + G+KL+D
Sbjct: 10 YKLN-HTMIRVKD-LDKSLKFYTEVFGMKLID 39
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 4.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 85 FLTVLVRTRPMAEVVQRCF 29
F T L R P++E+V RCF
Sbjct: 413 FKTSLYRDHPVSEIVGRCF 431
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 209 PAILFLRGLVGMIAISSHILLFVSK 135
P I LRGLV A H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.0 bits (52), Expect = 5.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 66 GHDPWLKLYSAAFDK 22
G D WLKL+ +AF K
Sbjct: 146 GDDTWLKLFPSAFSK 160
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 163 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 255
EIA++ TKP + I G RL S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 235 LRHSQVRGISIKLQEXERERRDNYVPEVSALEH 333
L++ + K Q+ ++R D + EVSA++H
Sbjct: 853 LKYKSLVSFMFKEQDANKKREDFHSGEVSAIQH 885
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,692,469
Number of Sequences: 5004
Number of extensions: 30595
Number of successful extensions: 71
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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