Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_K14
         (570 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IVB5 Cluster: LIX1-like protein; n=31; Eumetazoa|Rep:...   167   1e-40
UniRef50_Q8N485 Cluster: Protein limb expression 1 homolog; n=23...   130   3e-29
UniRef50_Q4RUT4 Cluster: Chromosome 12 SCAF14993, whole genome s...    89   7e-17
UniRef50_Q2IFX2 Cluster: Methyl-accepting chemotaxis sensory tra...    33   3.6  
UniRef50_Q8H740 Cluster: RING-H2 protein; n=1; Medicago sativa|R...    32   8.2  
UniRef50_A3BJX2 Cluster: Putative uncharacterized protein; n=3; ...    32   8.2  

>UniRef50_Q8IVB5 Cluster: LIX1-like protein; n=31; Eumetazoa|Rep:
           LIX1-like protein - Homo sapiens (Human)
          Length = 337

 Score =  167 bits (407), Expect = 1e-40
 Identities = 81/127 (63%), Positives = 90/127 (70%)
 Frame = +3

Query: 165 VNVVEALQEFWQVKXXXXXXXXXXXLVIYESVPAAHPPYVCYVTLPGGACFGSFQNCPTK 344
           VNVVEALQEFWQ+K           LV+YE VP+  PPYVCYVTLPGG+CFGSFQ CPTK
Sbjct: 98  VNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQFCPTK 157

Query: 345 AEARRSAAKIALMNSVFNEHESRRISDHFIEXXXXXXXXXXXGDTSNPHQDPSAGIAAFR 524
           AEARRSAAKIALMNSVFNEH SRRI+D FIE           G+      +P+ GI AFR
Sbjct: 158 AEARRSAAKIALMNSVFNEHPSRRITDEFIEKSVSEALASFNGNREEA-DNPNTGIGAFR 216

Query: 525 FMLESEQ 545
           FMLES +
Sbjct: 217 FMLESNK 223


>UniRef50_Q8N485 Cluster: Protein limb expression 1 homolog; n=23;
           Coelomata|Rep: Protein limb expression 1 homolog - Homo
           sapiens (Human)
          Length = 282

 Score =  130 bits (313), Expect = 3e-29
 Identities = 63/129 (48%), Positives = 81/129 (62%)
 Frame = +3

Query: 153 VLSTVNVVEALQEFWQVKXXXXXXXXXXXLVIYESVPAAHPPYVCYVTLPGGACFGSFQN 332
           V   +NVV  LQEFW+ K           +V+YES+PA  PP+V YVTLPGG+CFG+FQ 
Sbjct: 24  VFKDLNVVSMLQEFWESKQQQKAAFPSEGVVVYESLPAPGPPFVSYVTLPGGSCFGNFQC 83

Query: 333 CPTKAEARRSAAKIALMNSVFNEHESRRISDHFIEXXXXXXXXXXXGDTSNPHQDPSAGI 512
           C ++AEARR AAK+AL+NS+FNE  SRRI+  FI            G T +   DPS  +
Sbjct: 84  CLSRAEARRDAAKVALINSLFNELPSRRITKEFIMESVQEAVASTSG-TLDDADDPSTSV 142

Query: 513 AAFRFMLES 539
            A+ +MLES
Sbjct: 143 GAYHYMLES 151


>UniRef50_Q4RUT4 Cluster: Chromosome 12 SCAF14993, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 12 SCAF14993, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 666

 Score = 89.0 bits (211), Expect = 7e-17
 Identities = 39/65 (60%), Positives = 50/65 (76%)
 Frame = +3

Query: 240 LVIYESVPAAHPPYVCYVTLPGGACFGSFQNCPTKAEARRSAAKIALMNSVFNEHESRRI 419
           L++YES P   PPYVCYVTLPGG+CFG+++ C  +AEARR AA++ALMNS+ NE   R I
Sbjct: 40  LILYESAPTPGPPYVCYVTLPGGSCFGNYKVCLFQAEARRDAARVALMNSLVNELPCRCI 99

Query: 420 SDHFI 434
           +  FI
Sbjct: 100 NAQFI 104


>UniRef50_Q2IFX2 Cluster: Methyl-accepting chemotaxis sensory
           transducer precursor; n=1; Anaeromyxobacter dehalogenans
           2CP-C|Rep: Methyl-accepting chemotaxis sensory
           transducer precursor - Anaeromyxobacter dehalogenans
           (strain 2CP-C)
          Length = 526

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 371 FSGAASCFRFSWAVLKTAKARSTGERDVADVGRMGSRHRLVDDEGA 234
           F+GAA  F  SW  ++  +AR   ER       + + H LV+ +GA
Sbjct: 19  FAGAAGLFLLSWQSVRVLEARMLAERQAKVRALVEAAHGLVEHQGA 64


>UniRef50_Q8H740 Cluster: RING-H2 protein; n=1; Medicago sativa|Rep:
           RING-H2 protein - Medicago sativa (Alfalfa)
          Length = 295

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 16/38 (42%), Positives = 27/38 (71%)
 Frame = +1

Query: 238 PSSSTSLCRLPIRPTSATSRSPVERALAVFKTAQLKRK 351
           PSSS+++   P+ PTS+TS S V+ +L +F  + +KR+
Sbjct: 38  PSSSSTVRVSPVTPTSSTSSSVVD-SLPIFTFSSIKRR 74


>UniRef50_A3BJX2 Cluster: Putative uncharacterized protein; n=3;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 442

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = -2

Query: 563 SSIVRPLFAFQHEPKRSDTSAGVLVWVARVSGEXRACLRH 444
           S + RPL A  H  +R D +AGV    A  S + RA LRH
Sbjct: 95  SRMARPLLAAPHLARRRDAAAGVEARDAVRSRDVRAALRH 134


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 455,901,826
Number of Sequences: 1657284
Number of extensions: 7173148
Number of successful extensions: 18857
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18849
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)