Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_K14
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    27   1.5  
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    27   2.6  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   5.9  

>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 267 AHPPYVCYVTLPGGACFGSFQNCPTKAEARRSAAKIALMNSVF 395
           A+ P  CYV+    A     +   TK EA R  +KI+ + S+F
Sbjct: 148 ANVPVYCYVSAHAAAPGLDPRYIKTKREAEREISKISNLRSIF 190


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 511 IPALGSWCGLLVSPAKXARASATAFSMKWS 422
           I  +GS+ GLL SP     A + AF   WS
Sbjct: 198 ILTMGSFAGLLPSPYLSTYAGSKAFLSNWS 227


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 282 VCYVTLPGGA-CFGSFQNCPTKAEARRSAAKIALMNSV 392
           +C+ T   G  CF  F+N P   EA ++   + L +S+
Sbjct: 455 LCFRTKGNGPMCFVEFENIPYAMEALKNLQGVCLSSSI 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,747,399
Number of Sequences: 5004
Number of extensions: 25854
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)