Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_K14
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0439 + 18212584-18213065,18214164-18215010                       32   0.28 
04_04_0680 - 27217563-27220088                                         29   2.0  
02_02_0252 + 8323087-8323523,8323929-8324019,8324155-8324281,832...    28   6.0  
04_04_0836 + 28546414-28547001                                         27   8.0  

>07_03_0439 + 18212584-18213065,18214164-18215010
          Length = 442

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = -2

Query: 563 SSIVRPLFAFQHEPKRSDTSAGVLVWVARVSGEXRACLRH 444
           S + RPL A  H  +R D +AGV    A  S + RA LRH
Sbjct: 95  SRMARPLLAAPHLARRRDAAAGVEARDAVRSRDVRAALRH 134


>04_04_0680 - 27217563-27220088
          Length = 841

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = -1

Query: 198 AKTLGGLPLRSQSRGLHQLCXXXXXXXXXXXXXRPSGTAPGTPWPRRYLIAARGACGCTG 19
           A++ GG+ ++  SRGL ++               P        +PR Y  A    CGC G
Sbjct: 555 AESYGGIIIKDISRGLEKI-PVSVVNSISDEYPMPYRYIAHLQYPRNYQPAPPAGCGCVG 613

Query: 18  VCA 10
            C+
Sbjct: 614 GCS 616


>02_02_0252 +
           8323087-8323523,8323929-8324019,8324155-8324281,
           8324469-8324623
          Length = 269

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 311 RSTGERDVADVGRMGSRHRLVDDEGAARR 225
           ++TG  D+A    M ++H L+  EGAA R
Sbjct: 241 KATGGADIATAASMQAKHELLACEGAAMR 269


>04_04_0836 + 28546414-28547001
          Length = 195

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -2

Query: 332 VLKTAKARSTGERDVADVGRMGSRHRLVDDEGAA-RRAPASCRLHLPKLLEGFHYV 168
           VL TAK      R  ADV        + DDE A    +PA  +L +  L EG  +V
Sbjct: 112 VLLTAKPEGDFPRRQADVVAHLPAQTMADDEEATTESSPAKAKLPMGSLYEGAMFV 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,249,262
Number of Sequences: 37544
Number of extensions: 223400
Number of successful extensions: 636
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)