Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_K13
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    49   3e-07
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    42   2e-05
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   1.6  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    25   3.8  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    24   6.7  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    24   8.8  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 48.8 bits (111), Expect = 3e-07
 Identities = 30/58 (51%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
 Frame = +3

Query: 78  KTF*LTARRKDAKSVKIKKNP-ENVKFKASMLKVPATPWLITDKEKAXKLKQSLPPGL 248
           K F   ARRKDA S +IKKN  ++VKFK    K   T  ++ D +KA KL+QSLPP L
Sbjct: 9   KQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYT-LVVADAKKAEKLRQSLPPDL 65


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 42.3 bits (95), Expect = 2e-05
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +3

Query: 78  KTF*LTARRKDAKSVKIKKNPEN-VKFKASMLKVPATPWLITDKEKAXKLKQSLPPGL 248
           K F   A R DA S ++KKN    VKFK    +   T  ++ D +KA KL+QSLPP L
Sbjct: 9   KLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYT-LVVADAKKAEKLRQSLPPAL 65


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 272 TSLYFFNLETWR*TLLKFXSLLFVSDEPGCSRNLEH 165
           TSL+  NL  +   LL F  +L +  +P C RN++H
Sbjct: 201 TSLWKNNLADFDDLLLNF--ILLLQKQPDCVRNIKH 234


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 145 FSGFFFILTDLASFLL 98
           F GFFFIL  L SFL+
Sbjct: 17  FWGFFFILFPLVSFLM 32


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 154 NLTFSGFFFILTDLASF 104
           NL  +GFFF+L  + SF
Sbjct: 359 NLVIAGFFFMLMGIVSF 375


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 14  LLTVLVENYSSSTCRAEIKDIKDFLI 91
           LLT ++    SS CRA   +I+D+L+
Sbjct: 74  LLTYVIPPGESSKCRAMKAEIEDWLL 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 967,335
Number of Sequences: 5004
Number of extensions: 15336
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)