Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_K13
(371 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528 60 5e-10
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161... 60 5e-10
05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471 59 1e-09
11_01_0459 + 3546101-3548771,3548871-3549238 27 3.6
12_02_1222 + 27145264-27148287 27 4.7
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 27 4.7
03_05_0325 + 23135816-23135894,23136161-23136333,23136440-231366... 27 4.7
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928... 27 4.7
07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155 27 6.2
08_01_0338 + 3000897-3002447 26 8.2
>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
Length = 69
Score = 60.1 bits (139), Expect = 5e-10
Identities = 33/57 (57%), Positives = 39/57 (68%)
Frame = +3
Query: 78 KTF*LTARRKDAKSVKIKKNPENVKFKASMLKVPATPWLITDKEKAXKLKQSLPPGL 248
K F LTARRKDA+SV+IK+ + VKFK K T + D +KA KLKQSLPPGL
Sbjct: 9 KDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYT-LCVFDADKANKLKQSLPPGL 64
>07_03_0802 -
21614891-21615195,21615637-21615823,21615939-21616154,
21616669-21616872,21617336-21617569,21617670-21617763,
21618844-21618890,21619293-21619309,21620183-21620459
Length = 526
Score = 60.1 bits (139), Expect = 5e-10
Identities = 33/57 (57%), Positives = 39/57 (68%)
Frame = +3
Query: 78 KTF*LTARRKDAKSVKIKKNPENVKFKASMLKVPATPWLITDKEKAXKLKQSLPPGL 248
K F LTARRKDA+SV+IK+ + VKFK K T + D +KA KLKQSLPPGL
Sbjct: 39 KDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYT-LCVFDADKANKLKQSLPPGL 94
>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
Length = 69
Score = 59.3 bits (137), Expect = 1e-09
Identities = 32/57 (56%), Positives = 40/57 (70%)
Frame = +3
Query: 78 KTF*LTARRKDAKSVKIKKNPENVKFKASMLKVPATPWLITDKEKAXKLKQSLPPGL 248
K F LTARRKDA+SV+IK++ + VKFK + T + D +KA KLKQSLPPGL
Sbjct: 9 KDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYT-LCVHDTDKANKLKQSLPPGL 64
>11_01_0459 + 3546101-3548771,3548871-3549238
Length = 1012
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 208 SLSVMSQGVAGTLSIEALNLTFSGFFFILTD 116
SL++ +QG+ G +S NLTF F F+ T+
Sbjct: 78 SLNLTNQGLVGQISPSLGNLTFLKFLFLDTN 108
>12_02_1222 + 27145264-27148287
Length = 1007
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 187 GVAGTLSIEALNLTFSGFFFILTDLA 110
GVAG ++E L+L F+GF + DL+
Sbjct: 116 GVAGCTALEVLDLAFNGFSGHVPDLS 141
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +2
Query: 32 ENYSSSTCRAEIKDIKDFLINGEEERRQIGQNKEE 136
E+ SS+ +A ++ K LING+E+++Q + +EE
Sbjct: 22 EDDSSNLLQARGRNKKHALINGDEQQQQQEEEEEE 56
>03_05_0325 + 23135816-23135894,23136161-23136333,23136440-23136613,
23136881-23137004,23137090-23137190,23137337-23137423,
23137801-23137896,23138209-23138329,23138475-23138603,
23139458-23139549,23139660-23139771,23140189-23140541,
23140670-23140899,23141179-23141278,23143357-23143411,
23143548-23145496,23145587-23145745,23146514-23146685,
23146758-23147056,23147246-23147521
Length = 1626
Score = 27.1 bits (57), Expect = 4.7
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -2
Query: 238 GKLCLSXSAFSLSVMSQGVAGTLSIEALNLTFSGFFFILTDLASFLLAV 92
GK+ L + + V+SQG+ G ++ L L++SG +L L F +AV
Sbjct: 956 GKIGLFFAVLTFIVLSQGIIGQKYLDGLLLSWSG-DDVLEILDHFAVAV 1003
>02_05_0717 +
31190626-31191234,31191954-31192394,31192699-31192802,
31193000-31194384,31194508-31194548,31195065-31195133,
31195335-31195435,31195747-31195825,31195939-31196037,
31196119-31196187,31197609-31197658,31197749-31197925,
31198045-31198152,31198224-31198290
Length = 1132
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 56 RAEIKDIKDFLINGEEERRQIGQNKEE 136
R ++KDI +++IN +E Q+ Q E
Sbjct: 544 RMKVKDISEYMINAAKENPQLAQKIHE 570
>07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155
Length = 220
Score = 26.6 bits (56), Expect = 6.2
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -2
Query: 223 SXSAFSLSVMSQGVAGTLSIEALNLTFSGFFFILT 119
S +AF L +++ +AG IEA +LTF G F LT
Sbjct: 85 SLAAFVLVIVAPLIAGIAIIEAASLTF-GLVFGLT 118
>08_01_0338 + 3000897-3002447
Length = 516
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 197 DEPGCSRNLEHRSLELDILRVLLYFDRFGVFPP 99
D PG +R E +L+ D+L L F F PP
Sbjct: 204 DRPGDARVREIEALQRDLLGNFLSFQVFAFLPP 236
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,156,206
Number of Sequences: 37544
Number of extensions: 92342
Number of successful extensions: 241
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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