Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_K13
         (371 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...    67   4e-12
Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical p...    27   3.2  
AC024826-15|AAF60790.1|  354|Caenorhabditis elegans Hypothetical...    26   9.9  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 35/58 (60%), Positives = 40/58 (68%)
 Frame = +3

Query: 78  KTF*LTARRKDAKSVKIKKNPENVKFKASMLKVPATPWLITDKEKAXKLKQSLPPGLQ 251
           K F + ARRKDAKSVKIKKN  N KFK        T  ++ DK+KA KLKQSLPPG+Q
Sbjct: 9   KDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYT-LVVADKDKAEKLKQSLPPGIQ 65


>Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical
           protein F36G9.12 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 263 YFFNLETWR*TLLKFXSLLFVSDEPGCSRNLEHRSLELDIL 141
           YF N + W+ TLL   S       P C+ + E     LDIL
Sbjct: 16  YFANAKEWKETLLLHHSKNLTGVNPQCNNDTETWLHSLDIL 56


>AC024826-15|AAF60790.1|  354|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.13 protein.
          Length = 354

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 102 RKDAKSVKIKK--NPENVKFKASMLKVPATPWLITDKEKAXKLKQSLPPGL 248
           RK AK+  +KK  + E    K++   V +TPW + D  K  +   +L   L
Sbjct: 127 RKAAKAEAVKKLASGEAPPQKSAKKTVNSTPWTVQDDRKTWETNLTLTVNL 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,352,802
Number of Sequences: 27780
Number of extensions: 84851
Number of successful extensions: 244
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)