Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_K08
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    92   6e-20
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    26   4.1  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   7.2  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    25   7.2  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   9.5  
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    25   9.5  

>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 92.3 bits (219), Expect = 6e-20
 Identities = 41/113 (36%), Positives = 76/113 (67%), Gaps = 3/113 (2%)
 Frame = +3

Query: 312 DQSSQLLSRPRLQELVREVDPTVQLDEEVXEMLLQLAXDFIDTTLNSACALAKHRHAPNV 491
           D  ++LLS+ +L +L++++D   +++ EV E+LL++A +F+++  N AC LAKHR +  +
Sbjct: 337 DNGNRLLSKRKLHDLLQQIDSEEKIEPEVEELLLEIADEFVESVTNFACRLAKHRKSDTL 396

Query: 492 XLXDVQLHLXRQWNMWIPGFGNDEL-RPYKRAAVTEAHRQRMALI--RKSIKK 641
            + DVQLHL R WN+ +PGF +D++ +  ++   T +++Q+   I   KS+ K
Sbjct: 397 DVRDVQLHLERNWNIRLPGFASDDIVKSARKTGPTPSYQQKQNAIGTAKSLNK 449


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 255 HSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQ 350
           H P+G  SQV K  +G + D+SS  +   R Q
Sbjct: 737 HRPLGITSQVPKFEEGYSLDKSSHDIDPERAQ 768


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/59 (23%), Positives = 25/59 (42%)
 Frame = +3

Query: 123 NNSLAQAANMPTIGTVGQGAIQYVNNLMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQ 299
           +N   Q   +  +  +GQ  +Q     M++   Q  S   +P+Q S  G+   V   G+
Sbjct: 533 SNGSFQGPGITHLSEMGQRILQRFQEEMENRMNQTRSESSTPAQQSAAGSSINVDTAGR 591


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 525 QWNMWIPGFGNDELRPYK 578
           +WN WIP    D+L P K
Sbjct: 457 KWNEWIPDVELDDLHPKK 474


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 180 AIQYVNNLMQSPQLQNTSIQGSPSQH--SPMG 269
           ++++ N+ +Q  +L    I  SPS H  SPMG
Sbjct: 172 SLKHTNDSLQKKELSPHEIAESPSSHSTSPMG 203


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 180 AIQYVNNLMQSPQLQNTSIQGSPSQHS-PMGTQSQ 281
           +++  N   + P LQN SI  SPS+     GTQ +
Sbjct: 22  SVELENVEYEGPSLQNVSICASPSEKKRKWGTQDE 56


>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 213 PQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQS 320
           P    T+   +PS+H+ +G+Q+Q     Q  +G ++
Sbjct: 83  PLKTTTTTSSTPSKHADVGSQAQKQVQKQSSSGQRT 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,203
Number of Sequences: 5004
Number of extensions: 39775
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)