Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_K08
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 110 1e-24
01_06_1332 - 36379736-36379909,36380395-36380459,36380534-363806... 89 4e-18
11_01_0807 - 7178278-7178548,7178629-7178756,7178847-7179815,718... 30 1.4
05_06_0095 - 25482796-25483019,25483470-25484093,25484427-25484676 29 4.2
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 29 4.2
09_06_0120 - 20973635-20974879 28 5.6
03_01_0311 + 2453057-2454610 28 5.6
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 27 9.8
01_05_0532 - 22992520-22992879,22993323-22993403,22993565-229936... 27 9.8
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 110 bits (264), Expect = 1e-24
Identities = 47/110 (42%), Positives = 75/110 (68%)
Frame = +3
Query: 306 AGDQSSQLLSRPRLQELVREVDPTVQLDEEVXEMLLQLAXDFIDTTLNSACALAKHRHAP 485
AG ++LLS+ + ELV ++DP+ +LD EV ++L+ +A DF+++ AC+LAKHR +
Sbjct: 156 AGGSGNRLLSKRSIHELVAQIDPSEKLDPEVEDVLIDIAEDFVESVATFACSLAKHRKSS 215
Query: 486 NVXLXDVQLHLXRQWNMWIPGFGNDELRPYKRAAVTEAHRQRMALIRKSI 635
+ DV LH R WN+ +PGF DE++ YK+ V + HR+R+ LI+KS+
Sbjct: 216 ILEAKDVLLHAERSWNITLPGFSGDEIKLYKKPHVNDIHRERLTLIKKSM 265
>01_06_1332 -
36379736-36379909,36380395-36380459,36380534-36380612,
36380794-36380868,36381106-36381609,36382046-36382246,
36383033-36383566
Length = 543
Score = 88.6 bits (210), Expect = 4e-18
Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 7/142 (4%)
Frame = +3
Query: 174 QGAIQYVNNLMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVG---QGGAGDQ----SSQLL 332
Q +Q + QSP++ S GS + G+Q G GG+ Q ++QLL
Sbjct: 346 QHILQQLQQQQQSPRI---SASGSQKSMNLTGSQPGTPLSGGTMTGGSASQGAEVTNQLL 402
Query: 333 SRPRLQELVREVDPTVQLDEEVXEMLLQLAXDFIDTTLNSACALAKHRHAPNVXLXDVQL 512
+ ++Q+LV +VDP ++D EV ++LL++A DFID+ AC LAKHR + + DV L
Sbjct: 403 GKRKIQDLVSQVDPLGKVDPEVEDLLLEIADDFIDSVTAFACTLAKHRKSSVLEAKDVLL 462
Query: 513 HLXRQWNMWIPGFGNDELRPYK 578
HL + W++ +PGF ++ P +
Sbjct: 463 HLEKNWHLSVPGFLREDKNPQR 484
>11_01_0807 -
7178278-7178548,7178629-7178756,7178847-7179815,
7180465-7180518,7180622-7180798,7180913-7181926,
7182038-7182101,7182247-7182563,7182797-7182847
Length = 1014
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Frame = +3
Query: 216 QLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRP--RLQELVR-EVDPTVQL 386
+L G P H P + A GG GD Q P +L R DP +
Sbjct: 46 ELSEGEKDGKPDTHPPPAAAAAEAAADDGGGGDHQQQQQQPPPHQLSRFARINSDPRIVS 105
Query: 387 DEE 395
DEE
Sbjct: 106 DEE 108
>05_06_0095 - 25482796-25483019,25483470-25484093,25484427-25484676
Length = 365
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 117 MSNNSLAQAANMPTIGTVGQGAIQYVNNLMQSPQLQNTSIQGSPSQHS 260
+ + A A I TVG G+ Y+NN P NT Q +P Q++
Sbjct: 149 LGDEDTAAAHLSQCIFTVGMGSNDYLNNYFM-PAFYNTGSQYTPEQYA 195
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 28.7 bits (61), Expect = 4.2
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Frame = +3
Query: 171 GQGAIQYVNNLMQSPQLQNTSIQ-GSPSQHSP---MGTQSQVAKVGQGGAGDQSSQLLSR 338
G G + + SP Q S + G P+ P A GG GD+S + R
Sbjct: 445 GTGTSKETRSPALSPPPQAASFKSGLPTDAFPGRLADNADHAAAAAAGGGGDKSEETTPR 504
Query: 339 PRLQEL----VREVDPTVQLDEEVXEMLLQLAXDFIDT 440
P+L+ L VR V + +++ Q+ + I+T
Sbjct: 505 PKLKPLHWDKVRASSDRVMVWDQLKSSSFQVNEEMIET 542
>09_06_0120 - 20973635-20974879
Length = 414
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/89 (23%), Positives = 39/89 (43%)
Frame = +3
Query: 210 SPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLD 389
SP L G+P+ P G S A VG A + L + P L L+ P +
Sbjct: 18 SPSLPPNPAAGNPTSSPPQGNPSAAAAVGAAAAA--APTLTTSPSLLPLL----PPLPRA 71
Query: 390 EEVXEMLLQLAXDFIDTTLNSACALAKHR 476
+ + +++ LA + + + + A ++ +R
Sbjct: 72 QALLQLISALASNLFELSPSRAAWISAYR 100
>03_01_0311 + 2453057-2454610
Length = 517
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +3
Query: 240 GSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPT 377
G+P SP QS VA V +GG Q L +L+ L D T
Sbjct: 40 GAPPVSSPAARQSLVAVVSEGGEDSQRFLLEQEEQLRRLPSARDVT 85
>03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = +3
Query: 183 IQYVNNLMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELV 359
+Q + N+M +PQ N + +P+ + M + +Q+ ++ Q + QL S LQ+L+
Sbjct: 1087 MQMMQNIMSNPQSMNQLLNINPNVRNMMESNTQLREMFQN--PEFVRQLTSPETLQQLI 1143
>01_05_0532 -
22992520-22992879,22993323-22993403,22993565-22993639,
22994140-22994301
Length = 225
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/64 (26%), Positives = 25/64 (39%)
Frame = +3
Query: 120 SNNSLAQAANMPTIGTVGQGAIQYVNNLMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQ 299
S N A ++ P+ G+ GQ + + S Q +NT + S QS G
Sbjct: 126 SANPFANSSIQPSAGSYGQATVGFAPRPSISDQSKNTIFSNALSSPVRRSLQSYHLTQGS 185
Query: 300 GGAG 311
G G
Sbjct: 186 GNGG 189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,313,029
Number of Sequences: 37544
Number of extensions: 252370
Number of successful extensions: 755
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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