Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_K08
(652 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X84002-1|CAA58826.1| 161|Homo sapiens PolII transcription facto... 164 3e-40
U57693-1|AAC50600.1| 161|Homo sapiens TAF20 protein. 164 3e-40
D50544-1|BAA09112.1| 161|Homo sapiens TFIID subunit p22 protein. 164 3e-40
BT007031-1|AAP35678.1| 161|Homo sapiens TAF12 RNA polymerase II... 164 3e-40
BC011986-1|AAH11986.1| 161|Homo sapiens TAF12 protein protein. 164 3e-40
AY206865-1|AAO13491.1| 161|Homo sapiens TAF12 RNA polymerase II... 164 3e-40
AL513497-6|CAI22291.1| 161|Homo sapiens TAF12 RNA polymerase II... 164 3e-40
U57693-2|AAC50601.1| 131|Homo sapiens TAF15 protein. 161 3e-39
AY771619-1|AAX14814.1| 1446|Homo sapiens olfactorin long isoform... 33 0.88
AB051810-1|BAD23798.1| 1374|Homo sapiens Uromodulin-like protein... 33 0.88
>X84002-1|CAA58826.1| 161|Homo sapiens PolII transcription factor
TFTIID protein.
Length = 161
Score = 164 bits (398), Expect = 3e-40
Identities = 79/146 (54%), Positives = 109/146 (74%), Gaps = 8/146 (5%)
Frame = +3
Query: 228 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 383
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 384 LDEEVXEMLLQLAXDFIDTTLNSACALAKHRHAPNVXLXDVQLHLXRQWNMWIPGFGNDE 563
LDE+V EMLLQ+A DFI++ + +AC LA+HR + + + DVQLHL RQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 564 LRPYKRAAVTEAHRQRMALIRKSIKK 641
+RPYK+A TEAH+QRMALIRK+ KK
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTKK 161
>U57693-1|AAC50600.1| 161|Homo sapiens TAF20 protein.
Length = 161
Score = 164 bits (398), Expect = 3e-40
Identities = 79/146 (54%), Positives = 109/146 (74%), Gaps = 8/146 (5%)
Frame = +3
Query: 228 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 383
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 384 LDEEVXEMLLQLAXDFIDTTLNSACALAKHRHAPNVXLXDVQLHLXRQWNMWIPGFGNDE 563
LDE+V EMLLQ+A DFI++ + +AC LA+HR + + + DVQLHL RQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 564 LRPYKRAAVTEAHRQRMALIRKSIKK 641
+RPYK+A TEAH+QRMALIRK+ KK
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTKK 161
>D50544-1|BAA09112.1| 161|Homo sapiens TFIID subunit p22 protein.
Length = 161
Score = 164 bits (398), Expect = 3e-40
Identities = 79/146 (54%), Positives = 109/146 (74%), Gaps = 8/146 (5%)
Frame = +3
Query: 228 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 383
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 384 LDEEVXEMLLQLAXDFIDTTLNSACALAKHRHAPNVXLXDVQLHLXRQWNMWIPGFGNDE 563
LDE+V EMLLQ+A DFI++ + +AC LA+HR + + + DVQLHL RQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 564 LRPYKRAAVTEAHRQRMALIRKSIKK 641
+RPYK+A TEAH+QRMALIRK+ KK
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTKK 161
>BT007031-1|AAP35678.1| 161|Homo sapiens TAF12 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 20kD
protein.
Length = 161
Score = 164 bits (398), Expect = 3e-40
Identities = 79/146 (54%), Positives = 109/146 (74%), Gaps = 8/146 (5%)
Frame = +3
Query: 228 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 383
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 384 LDEEVXEMLLQLAXDFIDTTLNSACALAKHRHAPNVXLXDVQLHLXRQWNMWIPGFGNDE 563
LDE+V EMLLQ+A DFI++ + +AC LA+HR + + + DVQLHL RQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 564 LRPYKRAAVTEAHRQRMALIRKSIKK 641
+RPYK+A TEAH+QRMALIRK+ KK
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTKK 161
>BC011986-1|AAH11986.1| 161|Homo sapiens TAF12 protein protein.
Length = 161
Score = 164 bits (398), Expect = 3e-40
Identities = 79/146 (54%), Positives = 109/146 (74%), Gaps = 8/146 (5%)
Frame = +3
Query: 228 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 383
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 384 LDEEVXEMLLQLAXDFIDTTLNSACALAKHRHAPNVXLXDVQLHLXRQWNMWIPGFGNDE 563
LDE+V EMLLQ+A DFI++ + +AC LA+HR + + + DVQLHL RQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 564 LRPYKRAAVTEAHRQRMALIRKSIKK 641
+RPYK+A TEAH+QRMALIRK+ KK
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTKK 161
>AY206865-1|AAO13491.1| 161|Homo sapiens TAF12 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 20kD
protein.
Length = 161
Score = 164 bits (398), Expect = 3e-40
Identities = 79/146 (54%), Positives = 109/146 (74%), Gaps = 8/146 (5%)
Frame = +3
Query: 228 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 383
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 384 LDEEVXEMLLQLAXDFIDTTLNSACALAKHRHAPNVXLXDVQLHLXRQWNMWIPGFGNDE 563
LDE+V EMLLQ+A DFI++ + +AC LA+HR + + + DVQLHL RQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 564 LRPYKRAAVTEAHRQRMALIRKSIKK 641
+RPYK+A TEAH+QRMALIRK+ KK
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTKK 161
>AL513497-6|CAI22291.1| 161|Homo sapiens TAF12 RNA polymerase II,
TATA box binding proteineudogene protein.
Length = 161
Score = 164 bits (398), Expect = 3e-40
Identities = 79/146 (54%), Positives = 109/146 (74%), Gaps = 8/146 (5%)
Frame = +3
Query: 228 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 383
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 384 LDEEVXEMLLQLAXDFIDTTLNSACALAKHRHAPNVXLXDVQLHLXRQWNMWIPGFGNDE 563
LDE+V EMLLQ+A DFI++ + +AC LA+HR + + + DVQLHL RQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 564 LRPYKRAAVTEAHRQRMALIRKSIKK 641
+RPYK+A TEAH+QRMALIRK+ KK
Sbjct: 136 IRPYKKACTTEAHKQRMALIRKTTKK 161
>U57693-2|AAC50601.1| 131|Homo sapiens TAF15 protein.
Length = 131
Score = 161 bits (390), Expect = 3e-39
Identities = 75/131 (57%), Positives = 101/131 (77%), Gaps = 5/131 (3%)
Frame = +3
Query: 264 MGTQSQVAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQLDEEVXEMLLQLAXD 428
M + V K+ G GAG +++Q+L++ +LQ+LVREVDP QLDE+V EMLLQ+A D
Sbjct: 1 MANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADD 60
Query: 429 FIDTTLNSACALAKHRHAPNVXLXDVQLHLXRQWNMWIPGFGNDELRPYKRAAVTEAHRQ 608
FI++ + +AC LA+HR + + + DVQLHL RQWNMWIPGFG++E+RPYK+A TEAH+Q
Sbjct: 61 FIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQ 120
Query: 609 RMALIRKSIKK 641
RMALIRK+ KK
Sbjct: 121 RMALIRKTTKK 131
>AY771619-1|AAX14814.1| 1446|Homo sapiens olfactorin long isoform
precursor protein.
Length = 1446
Score = 33.1 bits (72), Expect = 0.88
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +3
Query: 153 PTIGTVGQGAIQYVNNLMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQS 320
P+ G+ QG+++ + SP ++TS QGSPSQ +P + A QG S
Sbjct: 653 PSQGSPSQGSLRQESTSQASPSQRSTS-QGSPSQVNPSQGSTSHANSSQGSPSQGS 707
>AB051810-1|BAD23798.1| 1374|Homo sapiens Uromodulin-like protein
protein.
Length = 1374
Score = 33.1 bits (72), Expect = 0.88
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +3
Query: 153 PTIGTVGQGAIQYVNNLMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQS 320
P+ G+ QG+++ + SP ++TS QGSPSQ +P + A QG S
Sbjct: 581 PSQGSPSQGSLRQESTSQASPSQRSTS-QGSPSQVNPSQGSTSHANSSQGSPSQGS 635
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,139,751
Number of Sequences: 237096
Number of extensions: 1387111
Number of successful extensions: 4049
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4047
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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