Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_K08
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical ...    64   1e-10
AF016450-11|AAB65981.1|  317|Caenorhabditis elegans Hypothetical...    28   6.6  

>AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical
           protein Y56A3A.4 protein.
          Length = 342

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 9/162 (5%)
 Frame = +3

Query: 183 IQYVNNLMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVR 362
           +Q+     Q P  Q   IQ  P    P   Q Q        A      ++ + +L +L++
Sbjct: 185 VQHQQQHQQPPPSQQ--IQQPPI---PQPQQQQAPPPQMIPAAVPYGSIMEKSKLDDLMQ 239

Query: 363 EVDPTVQLDEEVXEMLLQLAXDFIDTTLNSACALAKHRHAPNVXLXDVQLHLXRQWNM-W 539
           ++  T  L+E V ++L++ A DF+ + ++ AC + K+R    +   D++  L   +NM  
Sbjct: 240 QISSTTVLEENVKDVLVEYADDFVSSLIDKACKMIKNREVKKIESRDIEFILKNVYNMPV 299

Query: 540 IP-----GFGN--DELRPYKRAAV-TEAHRQRMALIRKSIKK 641
           +P      FG+  + +   K   V TEAH+QR+AL++K IKK
Sbjct: 300 VPRAASHNFGSQTEVIDLSKEKFVPTEAHKQRVALLKKQIKK 341


>AF016450-11|AAB65981.1|  317|Caenorhabditis elegans Hypothetical
           protein B0238.11 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
 Frame = +3

Query: 432 IDTTLNSACALAKHRHAPNVXLXDVQLHLXRQWNMWIPGFGNDELRPYKRA--AVTEAHR 605
           I T LNS  +L +++  P+     +QL++ ++  + + G G + ++   +A  A TE  +
Sbjct: 146 ISTYLNSEKSLVEYKSMPDRPPTKIQLYI-KKHQIMLKGIGGEPMKNAYKAMNADTEGAK 204

Query: 606 QRMALIRKSIKKY 644
           +   L+R++  +Y
Sbjct: 205 ELDELLREASLQY 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,768,953
Number of Sequences: 27780
Number of extensions: 229532
Number of successful extensions: 639
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)