Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_K06
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    81   1e-16
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    79   3e-16
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    28   0.56 

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 80.6 bits (190), Expect = 1e-16
 Identities = 40/107 (37%), Positives = 58/107 (54%)
 Frame = +1

Query: 79  AGGEHHHRINMDKYHPGYFGKLGMRNFHFXKNKNFCPVLNLXKLWTLXSEQTXLKYASAP 258
           AGG  H R + DKYHPGYFGK+GMR FH  KN  + P +NL +LWTL   +T  KY    
Sbjct: 35  AGGLQHLRSHFDKYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKN 94

Query: 259 DGXVPAHQYCQSWILQVARQRQTPQTTCHSKSKVLLKISXEENQRCG 399
               P     QS   +V  + + P T    +++ + + + E+ ++ G
Sbjct: 95  TEVAPVINVLQSGYGKVLGKGRLPDTPVIIQTRYVSRRAEEKIKQAG 141


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 79.0 bits (186), Expect = 3e-16
 Identities = 39/107 (36%), Positives = 58/107 (54%)
 Frame = +1

Query: 79  AGGEHHHRINMDKYHPGYFGKLGMRNFHFXKNKNFCPVLNLXKLWTLXSEQTXLKYASAP 258
           AGG  H R + DKYHPGYFGK+GMR FH  KN  + P +NL +LWTL   +   KY    
Sbjct: 35  AGGLQHLRSHFDKYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKN 94

Query: 259 DGXVPAHQYCQSWILQVARQRQTPQTTCHSKSKVLLKISXEENQRCG 399
               P     QS   +V  + + P+T    +++ + + + E+ ++ G
Sbjct: 95  TEVAPVINVLQSGYGKVLGKGRLPETPVIVQTRYVSRRAEEKIKQAG 141


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 28.3 bits (60), Expect = 0.56
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = +1

Query: 196 NLXKLWTLXSEQTXLKYASAPDGXVP--AHQYCQSWILQVARQRQTPQTTCHSKSKVLLK 369
           NL K W   S     K++  P+G +P    +   SW +       TP TT  S +   LK
Sbjct: 323 NLKKQWASISPNITYKHSYNPNGTIPECPSRNKTSWAVSANAFPVTPNTTICSNAVKNLK 382

Query: 370 IS 375
            S
Sbjct: 383 CS 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,521,389
Number of Sequences: 5004
Number of extensions: 26326
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)