Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_K06
(444 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1250 - 25183375-25183815 86 1e-17
03_04_0027 + 16593133-16593573 84 4e-17
02_01_0563 + 4134954-4135388 82 2e-16
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021... 27 5.1
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486 27 5.1
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626... 27 6.8
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 27 9.0
02_05_0608 + 30329174-30329362,30329681-30329907,30330035-303301... 27 9.0
01_06_0884 + 32715963-32716284,32716837-32717567 27 9.0
>07_03_1250 - 25183375-25183815
Length = 146
Score = 86.2 bits (204), Expect = 1e-17
Identities = 41/108 (37%), Positives = 62/108 (57%)
Frame = +1
Query: 76 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFXKNKNFCPVLNLXKLWTLXSEQTXLKYASA 255
NAGG HHHRI DKYHPGYFGK+GMR FH +NK + P +N+ +LW++ + + A A
Sbjct: 34 NAGGMHHHRILFDKYHPGYFGKVGMRYFHRLRNKFYSPAVNVERLWSMVPAEQAAEAAGA 93
Query: 256 PDGXVPAHQYCQSWILQVARQRQTPQTTCHSKSKVLLKISXEENQRCG 399
G P Q +V + P+ K+K++ K++ ++ + G
Sbjct: 94 --GKAPLLDVTQFGYFKVLGKGLLPEKPIVVKAKLISKVAEKKIKAAG 139
>03_04_0027 + 16593133-16593573
Length = 146
Score = 84.2 bits (199), Expect = 4e-17
Identities = 43/109 (39%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 76 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFXKNKNFCPVLNLXKLWTLXSEQTXLKYASA 255
NAGG HHHRI DKYHPGYFGK+GMR FH N+ CP +N+ +LW++ K A A
Sbjct: 34 NAGGMHHHRILFDKYHPGYFGKVGMRYFHKLSNRFHCPAVNVERLWSMVPTD---KAAEA 90
Query: 256 PDGXVPAHQYCQSWILQV-ARQRQTPQTTCHSKSKVLLKISXEENQRCG 399
G P Q +V + PQ K+K++ K++ ++ + G
Sbjct: 91 GAGKAPVIDVTQFGYTKVLGKGMLPPQRPIVVKAKLISKVAEKKIKAAG 139
>02_01_0563 + 4134954-4135388
Length = 144
Score = 81.8 bits (193), Expect = 2e-16
Identities = 39/108 (36%), Positives = 61/108 (56%)
Frame = +1
Query: 76 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFXKNKNFCPVLNLXKLWTLXSEQTXLKYASA 255
NAGG HHHRI DKYHPGYFGK+GMR FH N+ CP +N+ +LW++ + A
Sbjct: 34 NAGGMHHHRILFDKYHPGYFGKVGMRYFHRLSNRFHCPAVNVERLWSMVPAEAGAGAGKA 93
Query: 256 PDGXVPAHQYCQSWILQVARQRQTPQTTCHSKSKVLLKISXEENQRCG 399
P + Q+ + +L + P+ K+K++ K++ ++ + G
Sbjct: 94 P--VIDVTQFGYTKVL--GKGMLPPERPIVVKAKLISKVAEKKIKAAG 137
>09_04_0302 +
16501020-16501049,16501568-16501659,16502063-16502198,
16502297-16502727,16502950-16503028
Length = 255
Score = 27.5 bits (58), Expect = 5.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 103 FCDGAHHQHYHDLLDAYG 50
+C+G HH H H D+ G
Sbjct: 132 YCNGGHHHHGHQCYDSVG 149
>02_02_0525 -
11182043-11182080,11182386-11182511,11182760-11183486
Length = 296
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 86 PPALPRPPGCLRCFPIRPCP 27
PPA P PP L C P+ P P
Sbjct: 10 PPAPPSPPPALPCDPMPPPP 29
>04_03_1020 -
21761297-21761555,21761630-21761739,21762402-21762635,
21762710-21762817,21762910-21762969,21763549-21763624,
21763710-21763870,21764485-21764547,21764657-21764744,
21765062-21765592,21766344-21766783
Length = 709
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -2
Query: 89 SPP-ALPRPPGCLRCFPIRPCP 27
SPP LP PPG C P+ P P
Sbjct: 263 SPPHPLPLPPGPATCSPLPPSP 284
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 26.6 bits (56), Expect = 9.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 82 GGEHHHRINMDKYH 123
GG HHH+ NM K H
Sbjct: 313 GGGHHHKQNMQKQH 326
>02_05_0608 +
30329174-30329362,30329681-30329907,30330035-30330190,
30330893-30331078,30331184-30331368,30331571-30331602
Length = 324
Score = 26.6 bits (56), Expect = 9.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 120 PSWILWQTWYEKFPLXKEQE 179
P WILW T YE P+ +++
Sbjct: 245 PFWILWSTSYEVVPMLDKKK 264
>01_06_0884 + 32715963-32716284,32716837-32717567
Length = 350
Score = 26.6 bits (56), Expect = 9.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 95 WCSPPALPRPPGCLRCFP 42
WC PA+P+ RCFP
Sbjct: 186 WCPVPAMPQVDWEFRCFP 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,355,263
Number of Sequences: 37544
Number of extensions: 190136
Number of successful extensions: 616
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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