Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_K06
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...    91   3e-19
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    38   0.002
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    27   8.1  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score = 91.5 bits (217), Expect = 3e-19
 Identities = 42/108 (38%), Positives = 64/108 (59%)
 Frame = +1

Query: 76  NAGGEHHHRINMDKYHPGYFGKLGMRNFHFXKNKNFCPVLNLXKLWTLXSEQTXLKYASA 255
           NAGG+HHHRIN DKYHPGYFGK+GMR FH  KN+++CP +N+ +LW+L  ++   K   A
Sbjct: 34  NAGGQHHHRINRDKYHPGYFGKVGMRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---A 90

Query: 256 PDGXVPAHQYCQSWILQVARQRQTPQTTCHSKSKVLLKISXEENQRCG 399
             G  P     +    +V  +   P+T    K++     + ++ ++ G
Sbjct: 91  TGGKSPVIDCTKLGYFKVLGKGLLPETPLIVKARFFSHEAEQKIKKAG 138



 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = +2

Query: 269 SPLINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXINDVGGACVLSA 421
           SP+I+  K            P+ P+IV            I   GGACVL A
Sbjct: 95  SPVIDCTKLGYFKVLGKGLLPETPLIVKARFFSHEAEQKIKKAGGACVLVA 145


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 21/84 (25%), Positives = 41/84 (48%)
 Frame = +1

Query: 148 MRNFHFXKNKNFCPVLNLXKLWTLXSEQTXLKYASAPDGXVPAHQYCQSWILQVARQRQT 327
           MR FH  KN+++CP +N+ +LW+L  ++   K   A  G  P     +    +V  +   
Sbjct: 1   MRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLL 57

Query: 328 PQTTCHSKSKVLLKISXEENQRCG 399
           P+T    K++     + ++ ++ G
Sbjct: 58  PETPLIVKARFFSHEAEQKIKKAG 81



 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = +2

Query: 269 SPLINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXINDVGGACVLSA 421
           SP+I+  K            P+ P+IV            I   GGACVL A
Sbjct: 38  SPVIDCTKLGYFKVLGKGLLPETPLIVKARFFSHEAEQKIKKAGGACVLVA 88


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 83  PALPRPPGCLRCFPIRPCP 27
           PA P+ P C  C P +PCP
Sbjct: 50  PACPQAPSCPVCPPPQPCP 68


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
 Frame = +1

Query: 82  GGEHHHRINMDKYHPGYF-----GKLGMRN-FHFXKNKNFC 186
           G E HH    D YHP  F      +L + N + F KNK +C
Sbjct: 285 GVECHHHSTTDTYHPNCFRCETCRQLLVDNIYFFYKNKYYC 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,663,515
Number of Sequences: 27780
Number of extensions: 159517
Number of successful extensions: 438
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)