Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_K06
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.0  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   8.0  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   8.0  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +1

Query: 277 HQYCQSWILQVARQRQTPQTTCHSKS 354
           H   ++W+    R + TPQ+   S++
Sbjct: 242 HLERKAWVASFGRPKMTPQSLLPSQT 267


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 431 LLFTQIVHKHHPHR 390
           L +  +VH +HP+R
Sbjct: 15  LKYPMVVHVYHPYR 28


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 431 LLFTQIVHKHHPHR 390
           L +  +VH +HP+R
Sbjct: 15  LKYPMVVHVYHPYR 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,444
Number of Sequences: 438
Number of extensions: 2110
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)