Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_K05
(321 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VH69 Cluster: 40S ribosomal protein S29; n=31; Eukary... 91 4e-18
UniRef50_P62273 Cluster: 40S ribosomal protein S29; n=66; Eukary... 84 7e-16
UniRef50_UPI0000E202DC Cluster: PREDICTED: similar to ribosomal ... 75 2e-13
UniRef50_Q8INN0 Cluster: CG8495-PC, isoform C; n=1; Drosophila m... 74 5e-13
UniRef50_P90983 Cluster: Ribosomal protein, small subunit protei... 74 5e-13
UniRef50_A1DNZ6 Cluster: 40S ribosomal protein S29, putative; n=... 66 1e-10
UniRef50_Q680P8 Cluster: 40S ribosomal protein S29; n=4; Eukaryo... 66 2e-10
UniRef50_P54110 Cluster: 30S ribosomal protein S14P; n=7; Methan... 64 6e-10
UniRef50_Q1DQB3 Cluster: Predicted protein; n=4; Pezizomycotina|... 64 8e-10
UniRef50_UPI0001554864 Cluster: PREDICTED: similar to ribosomal ... 62 2e-09
UniRef50_O28368 Cluster: 30S ribosomal protein S14P; n=2; cellul... 60 1e-08
UniRef50_O74329 Cluster: 40S ribosomal protein S29; n=12; cellul... 59 2e-08
UniRef50_Q4Q817 Cluster: Ribosomal protein s29, putative; n=5; T... 58 5e-08
UniRef50_Q6CFB0 Cluster: Similar to sp|P41057 Saccharomyces cere... 57 7e-08
UniRef50_Q013Q2 Cluster: RS29_CULQU 40S ribosomal protein S29; n... 55 4e-07
UniRef50_Q74NE6 Cluster: 30S ribosomal protein S14P; n=2; Archae... 54 6e-07
UniRef50_O05635 Cluster: 30S ribosomal protein S14P; n=11; Therm... 52 2e-06
UniRef50_Q8SS73 Cluster: 40S ribosomal protein S29; n=1; Encepha... 50 1e-05
UniRef50_Q22MB0 Cluster: Putative uncharacterized protein; n=1; ... 49 2e-05
UniRef50_Q97BW2 Cluster: 30S ribosomal protein S14P; n=12; Archa... 48 3e-05
UniRef50_Q7R0P0 Cluster: GLP_79_44835_45248; n=1; Giardia lambli... 48 5e-05
UniRef50_Q9HPC0 Cluster: 30S ribosomal protein S14P; n=8; Euryar... 46 1e-04
UniRef50_P62012 Cluster: 30S ribosomal protein S14P; n=10; Archa... 44 9e-04
UniRef50_P26816 Cluster: 30S ribosomal protein S14P; n=3; Haloba... 42 0.003
UniRef50_Q8XHT6 Cluster: 30S ribosomal protein S14 type Z; n=83;... 33 1.2
UniRef50_A6CEA5 Cluster: Probable deca-heme c-type cytochrome; n... 32 2.1
UniRef50_Q2S713 Cluster: Transcriptional regulator; n=1; Hahella... 32 2.8
UniRef50_Q9GTH4 Cluster: Nuclear receptor NHR-43; n=3; Caenorhab... 31 3.7
UniRef50_A2Q443 Cluster: Putative uncharacterized protein; n=1; ... 31 6.5
UniRef50_Q7NEG5 Cluster: 30S ribosomal protein S14 type Z; n=3; ... 31 6.5
UniRef50_Q7QPG1 Cluster: GLP_541_5204_3867; n=1; Giardia lamblia... 30 8.6
>UniRef50_Q9VH69 Cluster: 40S ribosomal protein S29; n=31;
Eukaryota|Rep: 40S ribosomal protein S29 - Drosophila
melanogaster (Fruit fly)
Length = 56
Score = 91.1 bits (216), Expect = 4e-18
Identities = 38/44 (86%), Positives = 41/44 (93%)
Frame = +3
Query: 90 EYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKKLD 221
+YGQGSR CR+CSNRHGLIRKYGLNICRQCF EYA+DI FKKLD
Sbjct: 13 KYGQGSRCCRACSNRHGLIRKYGLNICRQCFREYANDIGFKKLD 56
>UniRef50_P62273 Cluster: 40S ribosomal protein S29; n=66;
Eukaryota|Rep: 40S ribosomal protein S29 - Homo sapiens
(Human)
Length = 56
Score = 83.8 bits (198), Expect = 7e-16
Identities = 35/44 (79%), Positives = 39/44 (88%)
Frame = +3
Query: 90 EYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKKLD 221
++GQGSRSCR CSNRHGLIRKYGLN+CRQCF +YA DI F KLD
Sbjct: 13 KFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56
>UniRef50_UPI0000E202DC Cluster: PREDICTED: similar to ribosomal
protein S29; n=4; Theria|Rep: PREDICTED: similar to
ribosomal protein S29 - Pan troglodytes
Length = 56
Score = 75.4 bits (177), Expect = 2e-13
Identities = 33/44 (75%), Positives = 36/44 (81%)
Frame = +3
Query: 90 EYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKKLD 221
++GQGSRSCR SNRHG IRKYGLN CRQCF +YA DI F KLD
Sbjct: 13 KFGQGSRSCRVYSNRHGRIRKYGLNKCRQCFHQYAKDIGFIKLD 56
>UniRef50_Q8INN0 Cluster: CG8495-PC, isoform C; n=1; Drosophila
melanogaster|Rep: CG8495-PC, isoform C - Drosophila
melanogaster (Fruit fly)
Length = 55
Score = 74.1 bits (174), Expect = 5e-13
Identities = 31/35 (88%), Positives = 33/35 (94%)
Frame = +3
Query: 117 RSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKKLD 221
R+CSNRHGLIRKYGLNICRQCF EYA+DI FKKLD
Sbjct: 21 RACSNRHGLIRKYGLNICRQCFREYANDIGFKKLD 55
>UniRef50_P90983 Cluster: Ribosomal protein, small subunit protein
29; n=18; Eukaryota|Rep: Ribosomal protein, small
subunit protein 29 - Caenorhabditis elegans
Length = 56
Score = 74.1 bits (174), Expect = 5e-13
Identities = 30/44 (68%), Positives = 36/44 (81%)
Frame = +3
Query: 90 EYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKKLD 221
++G GSRSCR C+ HGLIRKYGL++CR+CF E A DI FKKLD
Sbjct: 13 KFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56
>UniRef50_A1DNZ6 Cluster: 40S ribosomal protein S29, putative; n=2;
Fungi/Metazoa group|Rep: 40S ribosomal protein S29,
putative - Neosartorya fischeri (strain ATCC 1020 / DSM
3700 / NRRL 181)(Aspergillus fischerianus (strain ATCC
1020 / DSM 3700 / NRRL 181))
Length = 86
Score = 66.5 bits (155), Expect = 1e-10
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = +3
Query: 90 EYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKKL 218
++G+GSR CR C++R GLIRKYG++ICRQCF E A DI F K+
Sbjct: 13 KFGKGSRECRVCAHRAGLIRKYGMDICRQCFREKAQDIGFYKV 55
>UniRef50_Q680P8 Cluster: 40S ribosomal protein S29; n=4;
Eukaryota|Rep: 40S ribosomal protein S29 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 56
Score = 65.7 bits (153), Expect = 2e-10
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = +3
Query: 90 EYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 215
+YG GSR CR C N HGLIRKYGLN CRQCF A +I F K
Sbjct: 13 KYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
>UniRef50_P54110 Cluster: 30S ribosomal protein S14P; n=7;
Methanococcales|Rep: 30S ribosomal protein S14P -
Methanococcus jannaschii
Length = 53
Score = 64.1 bits (149), Expect = 6e-10
Identities = 28/45 (62%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Frame = +3
Query: 90 EYGQGSRSCRSCSN-RHGLIRKYGLNICRQCFXEYAHDIXFKKLD 221
+YG G R C+ C + GLIRKYGLN+CRQCF E AH + FKKLD
Sbjct: 9 KYGYGIRPCQRCGHVGPGLIRKYGLNLCRQCFREIAHKLGFKKLD 53
>UniRef50_Q1DQB3 Cluster: Predicted protein; n=4;
Pezizomycotina|Rep: Predicted protein - Coccidioides
immitis
Length = 123
Score = 63.7 bits (148), Expect = 8e-10
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +3
Query: 93 YGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 215
YG+GSR CR C+++ GLIRKYGL +CRQCF E + DI F K
Sbjct: 14 YGKGSRQCRVCAHKAGLIRKYGLLVCRQCFREKSQDIGFVK 54
>UniRef50_UPI0001554864 Cluster: PREDICTED: similar to ribosomal
protein S29; n=1; Ornithorhynchus anatinus|Rep:
PREDICTED: similar to ribosomal protein S29 -
Ornithorhynchus anatinus
Length = 168
Score = 62.5 bits (145), Expect = 2e-09
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +3
Query: 117 RSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 215
R CSNRHGLIRKYGLN+CRQCF +YA DI F K
Sbjct: 85 RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 117
>UniRef50_O28368 Cluster: 30S ribosomal protein S14P; n=2; cellular
organisms|Rep: 30S ribosomal protein S14P -
Archaeoglobus fulgidus
Length = 51
Score = 59.7 bits (138), Expect = 1e-08
Identities = 23/41 (56%), Positives = 29/41 (70%)
Frame = +3
Query: 93 YGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 215
+G+G+ CR C R GLIR YGL +CRQCF E A ++ FKK
Sbjct: 9 FGRGANECRRCGRRRGLIRMYGLYLCRQCFREVASELGFKK 49
>UniRef50_O74329 Cluster: 40S ribosomal protein S29; n=12; cellular
organisms|Rep: 40S ribosomal protein S29 -
Schizosaccharomyces pombe (Fission yeast)
Length = 56
Score = 59.3 bits (137), Expect = 2e-08
Identities = 27/42 (64%), Positives = 30/42 (71%)
Frame = +3
Query: 90 EYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 215
+YG+GSR C R GLIRKYGLNI RQ F EYA+DI F K
Sbjct: 13 KYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54
>UniRef50_Q4Q817 Cluster: Ribosomal protein s29, putative; n=5;
Trypanosomatidae|Rep: Ribosomal protein s29, putative -
Leishmania major
Length = 57
Score = 57.6 bits (133), Expect = 5e-08
Identities = 25/41 (60%), Positives = 29/41 (70%)
Frame = +3
Query: 96 GQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKKL 218
G+G+R C CSN+ LIRKY LN+CRQCF E A I F KL
Sbjct: 16 GKGARCCVICSNQKALIRKYELNVCRQCFRENAEHIGFTKL 56
>UniRef50_Q6CFB0 Cluster: Similar to sp|P41057 Saccharomyces
cerevisiae YLR388w YS29A ribosomal protein S29; n=1;
Yarrowia lipolytica|Rep: Similar to sp|P41057
Saccharomyces cerevisiae YLR388w YS29A ribosomal protein
S29 - Yarrowia lipolytica (Candida lipolytica)
Length = 78
Score = 57.2 bits (132), Expect = 7e-08
Identities = 24/41 (58%), Positives = 30/41 (73%)
Frame = +3
Query: 93 YGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 215
YG+G R CR +N++ +IRKYGLN+CRQ F E A DI F K
Sbjct: 36 YGKGGRKCRITNNQNAVIRKYGLNLCRQSFREKAADIGFTK 76
>UniRef50_Q013Q2 Cluster: RS29_CULQU 40S ribosomal protein S29; n=1;
Ostreococcus tauri|Rep: RS29_CULQU 40S ribosomal protein
S29 - Ostreococcus tauri
Length = 157
Score = 54.8 bits (126), Expect = 4e-07
Identities = 23/36 (63%), Positives = 26/36 (72%)
Frame = +3
Query: 108 RSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 215
R R C N+ +IRKY LNICRQCF EYA DI F+K
Sbjct: 120 RRSRVCENQWAIIRKYNLNICRQCFREYAKDIGFQK 155
>UniRef50_Q74NE6 Cluster: 30S ribosomal protein S14P; n=2;
Archaea|Rep: 30S ribosomal protein S14P - Nanoarchaeum
equitans
Length = 69
Score = 54.0 bits (124), Expect = 6e-07
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +3
Query: 90 EYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 215
++G+G+R C C G+IR+YGL +C+ CF E AH++ F K
Sbjct: 25 KFGKGARRCERCGRYDGIIRRYGLYLCKDCFKEVAHELGFFK 66
>UniRef50_O05635 Cluster: 30S ribosomal protein S14P; n=11;
Thermoprotei|Rep: 30S ribosomal protein S14P -
Sulfolobus acidocaldarius
Length = 54
Score = 52.4 bits (120), Expect = 2e-06
Identities = 19/41 (46%), Positives = 30/41 (73%)
Frame = +3
Query: 93 YGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 215
+G+G + C+ C +R +I+KYGL +CRQCF E A+ + F+K
Sbjct: 12 FGKGVQLCKRCGSRDSVIQKYGLYLCRQCFREVAYPMGFRK 52
>UniRef50_Q8SS73 Cluster: 40S ribosomal protein S29; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S29
- Encephalitozoon cuniculi
Length = 55
Score = 50.0 bits (114), Expect = 1e-05
Identities = 24/43 (55%), Positives = 29/43 (67%)
Frame = +3
Query: 93 YGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKKLD 221
+G+GSRSC SC G+IRK L +CR+CF EYA DI F D
Sbjct: 15 FGKGSRSCVSCYTFRGIIRK--LMMCRRCFREYAGDIGFAIYD 55
>UniRef50_Q22MB0 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 239
Score = 49.2 bits (112), Expect = 2e-05
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +3
Query: 93 YGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKKL 218
YG+ S+ CR C R GLI KY + CR+CF E A I F K+
Sbjct: 13 YGKDSKECRVCGARQGLITKYEMMTCRRCFREQAPHIGFVKV 54
>UniRef50_Q97BW2 Cluster: 30S ribosomal protein S14P; n=12;
Archaea|Rep: 30S ribosomal protein S14P - Thermoplasma
volcanium
Length = 53
Score = 48.4 bits (110), Expect = 3e-05
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3
Query: 114 CRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 215
C C + G++RKYGL++CRQCF E A + F+K
Sbjct: 18 CVRCGRKRGIVRKYGLHLCRQCFRETARQLGFEK 51
>UniRef50_Q7R0P0 Cluster: GLP_79_44835_45248; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_44835_45248 - Giardia lamblia
ATCC 50803
Length = 137
Score = 47.6 bits (108), Expect = 5e-05
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +3
Query: 108 RSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKKL 218
R CR C N + + RKYGL ICR+CF E A I F KL
Sbjct: 100 RECRICGNYNSVYRKYGLFICRRCFKENAGKIGFVKL 136
>UniRef50_Q9HPC0 Cluster: 30S ribosomal protein S14P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S14P -
Halobacterium salinarium (Halobacterium halobium)
Length = 52
Score = 46.4 bits (105), Expect = 1e-04
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +3
Query: 90 EYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 215
E GQ + CR C GL+ KY + +CRQCF E A + FKK
Sbjct: 10 ETGQ-THECRRCGREQGLVGKYDIWLCRQCFREIARSMGFKK 50
>UniRef50_P62012 Cluster: 30S ribosomal protein S14P; n=10;
Archaea|Rep: 30S ribosomal protein S14P - Pyrococcus
abyssi
Length = 56
Score = 43.6 bits (98), Expect = 9e-04
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +3
Query: 90 EYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKKLD 221
++G+G+R C C +IR +GL +CR CF E A + F+K +
Sbjct: 13 KFGKGARRCIRCGQYGPIIRIHGLMLCRHCFREVAPKLGFRKYE 56
>UniRef50_P26816 Cluster: 30S ribosomal protein S14P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S14P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 61
Score = 41.9 bits (94), Expect = 0.003
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 111 SCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 215
SC+ C GL+ KY + +CRQCF E + + F+K
Sbjct: 25 SCQRCGREQGLVGKYDIWLCRQCFREISRGMGFRK 59
>UniRef50_Q8XHT6 Cluster: 30S ribosomal protein S14 type Z; n=83;
Bacteria|Rep: 30S ribosomal protein S14 type Z -
Clostridium perfringens
Length = 61
Score = 33.1 bits (72), Expect = 1.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 114 CRSCSNRHGLIRKYGLNICRQCFXEYAH 197
CR C H +++K+G ICR CF E A+
Sbjct: 24 CRLCGRPHSVLKKFG--ICRICFRELAY 49
>UniRef50_A6CEA5 Cluster: Probable deca-heme c-type cytochrome; n=1;
Planctomyces maris DSM 8797|Rep: Probable deca-heme
c-type cytochrome - Planctomyces maris DSM 8797
Length = 728
Score = 32.3 bits (70), Expect = 2.1
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 69 FGILTLAE-YGQGSRSCRSCSNRHGLIRKY-GLNICRQCFXEYAHDI 203
FG T ++ Y +G R C C N H L K+ G +C QC E +D+
Sbjct: 295 FGSFTQSKMYRKGVR-CTDCHNPHSLKLKFTGNKLCTQCHLEARYDV 340
>UniRef50_Q2S713 Cluster: Transcriptional regulator; n=1; Hahella
chejuensis KCTC 2396|Rep: Transcriptional regulator -
Hahella chejuensis (strain KCTC 2396)
Length = 329
Score = 31.9 bits (69), Expect = 2.8
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = -3
Query: 172 LHMFKPYLRIKPC---LLEQDRHDRDPCPYSARVRIPXICVAHFKKL--NCC 32
LH+ KP L I+P ++ RHDRDP R +I +A + K +CC
Sbjct: 256 LHVTKPPLEIRPTPVSMIWHARHDRDPGVLWLREKIKFFTIAEWLKYLPSCC 307
>UniRef50_Q9GTH4 Cluster: Nuclear receptor NHR-43; n=3;
Caenorhabditis|Rep: Nuclear receptor NHR-43 -
Caenorhabditis elegans
Length = 459
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 114 CRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 215
CR C R+ + +G++ICR C + + KK
Sbjct: 57 CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90
>UniRef50_A2Q443 Cluster: Putative uncharacterized protein; n=1;
Medicago truncatula|Rep: Putative uncharacterized
protein - Medicago truncatula (Barrel medic)
Length = 65
Score = 30.7 bits (66), Expect = 6.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 133 LLEQDRHDRDPCPYSARVRIPXICVAHFKK 44
LL++D H+ +P P+ AR R + ++H K+
Sbjct: 22 LLDEDDHENEPLPFGARGRYRTLYLSHAKQ 51
>UniRef50_Q7NEG5 Cluster: 30S ribosomal protein S14 type Z; n=3;
Bacteria|Rep: 30S ribosomal protein S14 type Z -
Gloeobacter violaceus
Length = 68
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 114 CRSCSNRHGLIRKYGLNICRQCFXEYAH 197
C C G IR +GL CR CF E AH
Sbjct: 31 CWRCGRPRGYIRDFGL--CRICFREMAH 56
>UniRef50_Q7QPG1 Cluster: GLP_541_5204_3867; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_541_5204_3867 - Giardia lamblia ATCC
50803
Length = 445
Score = 30.3 bits (65), Expect = 8.6
Identities = 19/60 (31%), Positives = 23/60 (38%)
Frame = +3
Query: 18 LLVSXQQFNFLKWATQXFGILTLAEYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAH 197
L+V F F W F T YG R C C IR + IC +C +Y H
Sbjct: 69 LIVVSVHFCFAVWLDPGF---TTPSYGGIRRKCLICDKAKP-IRAHHCKICNRCVLKYDH 124
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,618,468
Number of Sequences: 1657284
Number of extensions: 3600777
Number of successful extensions: 8121
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 7916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8119
length of database: 575,637,011
effective HSP length: 83
effective length of database: 438,082,439
effective search space used: 10075896097
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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