Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_K05
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    59   1e-10
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    29   0.23 
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    26   1.6  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   3.8  
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe...    23   8.7  
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    23   8.7  
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    23   8.7  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    23   8.7  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    23   8.7  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 59.3 bits (137), Expect = 1e-10
 Identities = 27/42 (64%), Positives = 30/42 (71%)
 Frame = +3

Query: 90  EYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 215
           +YG+GSR C     R GLIRKYGLNI RQ F EYA+DI F K
Sbjct: 13  KYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54



 Score = 27.1 bits (57), Expect = 0.70
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 53 MGHANXWYSHPRR 91
          M H N W+SHPR+
Sbjct: 1  MAHENVWFSHPRK 13


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 28.7 bits (61), Expect = 0.23
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 72   GILTLAEYGQGSRSCRSCSNR 134
            G++ +A Y + S  CRSC NR
Sbjct: 1156 GLIAIASYKKDSYECRSCQNR 1176


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 63  QXFGILTLAEYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXE 188
           Q   +  +   G GS    +  N+ G +  +GLNI RQC  E
Sbjct: 274 QPLALKNIISVGAGSYHSFAIDNK-GRVYAWGLNITRQCGIE 314


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 39  FNFLKWATQXFGILTLAEYGQGSRSCRSCSNRHGL 143
           F+FL WA+   G+ T  +    S S  + ++ HGL
Sbjct: 613 FSFLSWASSPKGLNTFKKLSDSSLS-TTTTDSHGL 646


>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 139

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +2

Query: 95  RTRISVMPILLQQA-WLN--PQVRFEHMQTVLXRV 190
           +T +S +  LL+ A  +N  PQ+RFEH +  L RV
Sbjct: 4   KTNLSNITTLLRSARCMNRMPQLRFEHTKGDLKRV 38


>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 115 HDRDPCPY 92
           H RDPCPY
Sbjct: 6   HTRDPCPY 13


>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 95  RTRISVMPILLQQAW 139
           +T + V+P LLQQ+W
Sbjct: 73  KTSVKVVPWLLQQSW 87


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 59   HANXWYSHPRRIRTRIS 109
            HAN W  + R  RTRI+
Sbjct: 1580 HANSWIGYCRLTRTRIT 1596


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 3   VSLICLLVSXQQFNFLKWATQXFGILT 83
           VS+IC L      N+L++A   F +LT
Sbjct: 193 VSVICELARRAPKNYLEFAPDLFHLLT 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 910,676
Number of Sequences: 5004
Number of extensions: 14818
Number of successful extensions: 32
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)