Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_K05
         (321 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-15|CAD27766.1|   56|Anopheles gambiae putative ribosoma...    81   8e-18
U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.          23   3.7  
U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.          23   3.7  
U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.          23   3.7  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    22   4.9  
CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.           22   6.5  

>AJ439060-15|CAD27766.1|   56|Anopheles gambiae putative ribosomal
           protein protein.
          Length = 56

 Score = 81.4 bits (192), Expect = 8e-18
 Identities = 34/44 (77%), Positives = 38/44 (86%)
 Frame = +3

Query: 90  EYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKKLD 221
           +YGQGSR  R+CSN HG+IRKYGLNICRQCF EYA DI F+KLD
Sbjct: 13  KYGQGSRFWRACSNNHGMIRKYGLNICRQCFREYAKDIGFRKLD 56



 Score = 29.5 bits (63), Expect = 0.032
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 53 MGHANXWYSHPRR 91
          MG AN WYSHPR+
Sbjct: 1  MGFANLWYSHPRK 13


>U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 116 PILLQQAWLNPQVRFEHMQTVL 181
           P+LL +A LNP+   E M  ++
Sbjct: 103 PVLLTEAPLNPKANREKMTQIM 124


>U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 116 PILLQQAWLNPQVRFEHMQTVL 181
           P+LL +A LNP+   E M  ++
Sbjct: 103 PVLLTEAPLNPKANREKMTQIM 124


>U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 116 PILLQQAWLNPQVRFEHMQTVL 181
           P+LL +A LNP+   E M  ++
Sbjct: 103 PVLLTEAPLNPKANREKMTQIM 124


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 24  VSXQQFNFLKWATQXFGILTLAEYGQGSRSCRSCSNR 134
           +S  Q+ F +  +    I +L + G+ SRS    +NR
Sbjct: 542 LSDAQYGFRRGRSTISAIQSLVDAGKASRSFGQTNNR 578


>CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.
          Length = 376

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 116 PILLQQAWLNPQVRFEHMQTVL 181
           P+LL +A LNP+   E M  ++
Sbjct: 103 PVLLTEAPLNPKSNREKMTQIM 124


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,555
Number of Sequences: 2352
Number of extensions: 4729
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 21613350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)