Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_K05
         (321 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...    74   2e-14
Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical pr...    31   0.24 
AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear recep...    31   0.24 
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    27   2.3  
Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical pr...    27   3.0  
Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical pr...    26   5.3  
AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical...    26   7.0  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 30/44 (68%), Positives = 36/44 (81%)
 Frame = +3

Query: 90  EYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKKLD 221
           ++G GSRSCR C+  HGLIRKYGL++CR+CF E A DI FKKLD
Sbjct: 13  KFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 53 MGHANXWYSHPRR 91
          MG  N W+SHPR+
Sbjct: 1  MGFQNLWFSHPRK 13


>Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical
           protein C29E6.5 protein.
          Length = 449

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 114 CRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 215
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 47  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80


>AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-43 protein.
          Length = 459

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 114 CRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 215
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 57  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 101 RISVMPILLQQAWLNPQVRFEHMQTVLXRVCS*H 202
           RI   P++L+Q WL    R E       R+CS H
Sbjct: 27  RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60


>Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical
           protein ZK455.1 protein.
          Length = 887

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 33  QQFNFLKWATQXFGILTLAEYGQG 104
           ++FNFLKW ++ F  L +   G G
Sbjct: 150 ERFNFLKWGSKAFDNLLIVPPGSG 173


>Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical
           protein K10D6.1 protein.
          Length = 457

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +2

Query: 113 MPILLQQAWLNPQVRFEHMQTVLXRVCS*HXIQE 214
           M I + + WL+P ++F+H+      +   H + E
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQVLE 134


>AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical
           protein T15B7.16 protein.
          Length = 435

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 113 MPILLQQAWLNPQVRFEHMQTVL 181
           + +L  Q W +P++RF+H+   L
Sbjct: 80  LDLLFSQIWHDPRLRFDHLTNCL 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,096,522
Number of Sequences: 27780
Number of extensions: 88079
Number of successful extensions: 224
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)