Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_K04
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 228 3e-60
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 92 4e-19
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 91 7e-19
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 64 9e-11
11_06_0394 - 23084485-23084577,23084677-23084802,23085134-230852... 58 8e-09
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 54 1e-07
06_01_0387 - 2770387-2770514,2770963-2771063,2771152-2771255,277... 43 2e-04
03_03_0187 + 15253000-15253207,15253281-15253370,15254338-152544... 41 7e-04
02_05_0057 + 25472872-25472912,25473012-25473157,25474008-254740... 41 0.001
03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871 38 0.007
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 36 0.037
09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341 34 0.11
08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323 33 0.20
02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856 31 1.1
12_02_1081 + 25914180-25914371,25918121-25919104 29 4.2
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 28 7.4
03_04_0176 - 18123895-18123996,18124169-18124289,18124381-18124430 28 7.4
01_06_0158 - 27079262-27079346,27079662-27079750,27080540-270806... 27 9.8
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 228 bits (557), Expect = 3e-60
Identities = 104/161 (64%), Positives = 125/161 (77%)
Frame = +1
Query: 169 FENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHY 348
++N RNA L +KG P KTGTTIVG+++ DGV+LGADTRATE +V+DKNC+KIHY
Sbjct: 15 YDNCARNAMLVEKGLKMPGFLKTGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHY 74
Query: 349 LXSNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGA 528
+ N+YCCGAGTAADTE T V+SQL+L R TGR V T+ TLLK LF YQGH+ A
Sbjct: 75 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYATGRESRVVTSLTLLKSHLFSYQGHVSA 134
Query: 529 ALVLGGVDRTGPHIYCIYPHGSVXKLPYATMGSGSLAAMAV 651
ALVLGGVD TGPH++ +YPHGS LP+ATMGSGSLAAM+V
Sbjct: 135 ALVLGGVDVTGPHLHTVYPHGSTDTLPFATMGSGSLAAMSV 175
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 91.9 bits (218), Expect = 4e-19
Identities = 46/141 (32%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Frame = +1
Query: 214 PAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLXSNMYCCGAGTAAD 393
P + GTTIVG+ Y GV+L AD+R + V+++ KI L N+Y C +G+AAD
Sbjct: 17 PTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAAD 76
Query: 394 TEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDR-TGPHI 570
T++ ++ V L + G+ V+ AA L++ + ++ + + A +++GG D+ G I
Sbjct: 77 TQVISEYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQI 136
Query: 571 YCIYPHGSVXKLPYATMGSGS 633
+ + G++ + P+A GSGS
Sbjct: 137 FSVPLGGTILRQPFAIGGSGS 157
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 91.1 bits (216), Expect = 7e-19
Identities = 46/141 (32%), Positives = 80/141 (56%), Gaps = 1/141 (0%)
Frame = +1
Query: 214 PAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLXSNMYCCGAGTAAD 393
P + GTTIVG+ Y GV+L AD+R + V+++ KI L N+Y C +G+AAD
Sbjct: 17 PTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAAD 76
Query: 394 TEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDR-TGPHI 570
T++ + V L + G+ V+ AA L++ + ++ + + A +++GG D+ G I
Sbjct: 77 TQVISDYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQI 136
Query: 571 YCIYPHGSVXKLPYATMGSGS 633
+ + G++ + P+A GSGS
Sbjct: 137 FSVPLGGTILRQPFAIGGSGS 157
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 64.1 bits (149), Expect = 9e-11
Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 5/147 (3%)
Frame = +1
Query: 217 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLXSNMYCCGAGTAADT 396
A KA T+VGI DG++LG + T ++ N +++H + + AG AAD
Sbjct: 27 AGKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMILKGSN-RRLHSVHRHSGLAVAGLAADG 85
Query: 397 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRM-----LFRYQGHIGAALVLGGVDRTG 561
S+ G +PV+ A + L+ + G ++LGG DR G
Sbjct: 86 RQIVSRAKSEAASYEKVYGEPMPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDG 145
Query: 562 PHIYCIYPHGSVXKLPYATMGSGSLAA 642
P +Y I P G K A +G G AA
Sbjct: 146 PQLYMIEPSGLSYKYFGAALGKGRQAA 172
>11_06_0394 -
23084485-23084577,23084677-23084802,23085134-23085236,
23085895-23085953,23086418-23086519,23086601-23086714,
23087666-23087746,23088073-23088154,23088504-23088556
Length = 270
Score = 57.6 bits (133), Expect = 8e-09
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Frame = +1
Query: 217 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLXSNMYCCGAGTAADT 396
A +A K G+T +G+ DGV+L + R T + ++ + +KI + ++ C +G AD
Sbjct: 40 AIEAIKLGSTAIGLKTKDGVVLAVEKRVT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADA 98
Query: 397 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-QGH-------IGAALVLGGVD 552
+ + + R G + VE+ + + R+ +G G +L++ G D
Sbjct: 99 RTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGDEESMSRPFGVSLLIAGHD 158
Query: 553 RTGPHIYCIYPHGSVXKLPYATMGSGSLAA 642
GP +Y P G+ + +GSGS A
Sbjct: 159 ENGPSLYYTDPSGTFWQCNAKAIGSGSEGA 188
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 53.6 bits (123), Expect = 1e-07
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 13/155 (8%)
Frame = +1
Query: 217 APKATKTGTTIVGIIYADGVILGADTRATENTVV--SDKNCQKIHY------LXSNMYCC 372
A KA T+VGI DG++LG + T ++ S++ +H+ + N+
Sbjct: 27 ATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRIHSVHWHSGLDIILINVMAV 86
Query: 373 GAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRM-----LFRYQGHIGAALV 537
AG AAD S+ G + V+ A + L+ + G ++
Sbjct: 87 -AGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVI 145
Query: 538 LGGVDRTGPHIYCIYPHGSVXKLPYATMGSGSLAA 642
LGG DR GP +Y I P G K A +G G AA
Sbjct: 146 LGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAA 180
>06_01_0387 -
2770387-2770514,2770963-2771063,2771152-2771255,
2771345-2771507,2771550-2771596,2772818-2772946
Length = 223
Score = 42.7 bits (96), Expect = 2e-04
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = +1
Query: 373 GAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGH-IGAALVLGGV 549
G GT A E+ A Q L L R + + A+ LL +L+ Y+G + ++ G
Sbjct: 52 GIGTWASRELKV-GYAFQCRLHELANKRRISIAGASKLLANILYSYRGMGLSIGTMIAGW 110
Query: 550 DRTGPHIYCIYPHGSVXKLPYATMGSGSLAAMAV 651
D GP +Y + G+ ++GSGSL A +
Sbjct: 111 DEKGPGLYYVDSEGARLMGSRFSVGSGSLYAYGI 144
>03_03_0187 +
15253000-15253207,15253281-15253370,15254338-15254402,
15254489-15254535,15255195-15255270,15255432-15255499,
15255793-15255862,15256024-15256109,15256328-15256390,
15256472-15256537,15256938-15256986
Length = 295
Score = 41.1 bits (92), Expect = 7e-04
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 5/127 (3%)
Frame = +1
Query: 259 IYADGVILGADTRATENTVVSDKNCQKIHYLXSNMYCCGAGTAADTEMTTQSVASQLELQ 438
+ A+GV++ + + + +V + + QKI L N+ +G D + + Q +
Sbjct: 99 VAANGVVIATEKKLP-SILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQY 157
Query: 439 RLHTGRTVPV-----ETAATLLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVXK 603
T+PV ETAA + + G +L++ G D GP +Y + P GS
Sbjct: 158 YRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFS 217
Query: 604 LPYATMG 624
+ MG
Sbjct: 218 WKASAMG 224
>02_05_0057 +
25472872-25472912,25473012-25473157,25474008-25474072,
25474182-25474228,25474922-25474997,25475176-25475243,
25475862-25475931,25476178-25476263,25476418-25476480,
25476556-25476621,25476740-25476788
Length = 258
Score = 40.7 bits (91), Expect = 0.001
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Frame = +1
Query: 265 ADGVILGADTRATENTVVSDKNCQKIHYLXSNMYCCGAGTAADTEMTTQSVASQLELQRL 444
A+GV++ + + + +V + + QKI L N+ +G D + + Q +
Sbjct: 64 ANGVVIATEKKLP-SILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYR 122
Query: 445 HTGRTVPV-----ETAATLLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVXKLP 609
T+PV ETAA + + G +L++ G D GP +Y + P GS
Sbjct: 123 LYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWK 182
Query: 610 YATMG 624
+ MG
Sbjct: 183 ASAMG 187
>03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871
Length = 212
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = +1
Query: 247 IVGIIYADGVILGADTRATENTVVSDKNCQKIHYLXSNMYCCGAGTAADTEMTTQSVASQ 426
++G++ D ++ ADT A ++ +V + K+ L S+ +G D T+ +
Sbjct: 4 VIGVVGRDFAVVAADTSAVQSILVHKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFIQKN 63
Query: 427 LELQRLHTGRTVPVETAAT 483
L L + +P+ TAAT
Sbjct: 64 LHLYQFR--NNIPLSTAAT 80
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 35.5 bits (78), Expect = 0.037
Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Frame = +1
Query: 235 TGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLXSNMYCCGAGTAAD-TEMTTQ 411
TG++I+ + Y DGVI+ +DT A+ + + K+ ++I + + +G +D E+
Sbjct: 368 TGSSIIALKYKDGVIMASDTGASYGSTLRYKSVERIKAVGKHSLIGASGEFSDFQEILRY 427
Query: 412 SVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGH---IGAALVLGGVDRTGP 564
L G ++ + + L R+++ + + +LV+GGV + GP
Sbjct: 428 LDELTLSDHMWDDGNSLGPKEVHSYLTRVMYNRRNKFDPLWNSLVIGGV-KKGP 480
>09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341
Length = 249
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/85 (25%), Positives = 40/85 (47%)
Frame = +1
Query: 217 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLXSNMYCCGAGTAADT 396
A +A + G VG+ +D V+LG + ++T + ++ +KI L +++ AG AD
Sbjct: 23 ALEAVRKGNAAVGVRGSDTVVLGVEKKSTPK-LQDSRSVRKIASLDTHIALACAGLKADA 81
Query: 397 EMTTQSVASQLELQRLHTGRTVPVE 471
+ + + RL V VE
Sbjct: 82 RVLINRARVECQSHRLTVEDAVTVE 106
>08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323
Length = 319
Score = 33.1 bits (72), Expect = 0.20
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = +1
Query: 217 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLXSNMYCCGAGTAADT 396
A +A + G VG+ D V+LG + ++T + ++ +KI L +++ AG AD
Sbjct: 93 ALEAVRKGNAAVGVRGTDTVVLGVEKKSTPK-LQDSRSMRKIASLDTHIALACAGLKADA 151
Query: 397 EMTTQSVASQLELQRLHTGRTVPVE 471
+ + + RL V VE
Sbjct: 152 RVLINRARVECQSHRLTVEDPVTVE 176
>02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856
Length = 272
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 523 GAALVLGGVDRTGPHIYCIYPHGSVXKLPYATMGSGSLAA 642
G L++ G+D +G H+Y P G+ + +GS S AA
Sbjct: 131 GVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAA 170
>12_02_1081 + 25914180-25914371,25918121-25919104
Length = 391
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 125 GICISARNSSSRILALRIFNVMLFLLRKGFLHPKPPRPVLQL 250
G C+ R SSR+LA + F+ + +LLR L PP+P +++
Sbjct: 49 GRCVQRRVESSRVLA-QYFHNISYLLRP--LWDTPPKPFIRI 87
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 488 SSVAAVSTGTVRPVCKRCNS 429
S V +V+T T+RP+C RC +
Sbjct: 79 SPVESVTTATLRPICFRCTN 98
>03_04_0176 - 18123895-18123996,18124169-18124289,18124381-18124430
Length = 90
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 490 KRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPH 588
K++ F +G L G DRT ++ IYPH
Sbjct: 56 KKVHFVAWNCLGTELASGSTDRTNSRVWRIYPH 88
>01_06_0158 -
27079262-27079346,27079662-27079750,27080540-27080659,
27080738-27080894,27081167-27081231,27081323-27081436,
27082109-27082178,27082412-27082642,27082963-27083039,
27083143-27083237,27084514-27084574,27084678-27085073
Length = 519
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = -3
Query: 634 EIQIPWLHMVIYXQIHEDKCSKYEDRFCQHLPKP 533
E + W+H + +D +Y D+ C LP P
Sbjct: 397 ETAVVWMHTQLAQNQTQDLVLQYIDQLCDRLPSP 430
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,356,919
Number of Sequences: 37544
Number of extensions: 315878
Number of successful extensions: 769
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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