Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_K04
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical pr...   165   3e-41
AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome be...    75   4e-14
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    70   1e-12
Z79754-8|CAB02097.1|  248|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical pr...    44   1e-04
U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta...    43   2e-04
AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome al...    42   4e-04
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ...    31   0.71 
Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z77661-2|CAB01184.4|  265|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81079-4|CAB03081.1|  236|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AC006749-2|AAF60533.3|  731|Caenorhabditis elegans Hypothetical ...    29   3.8  
AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine re...    28   6.6  
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical
           protein C47B2.4 protein.
          Length = 277

 Score =  165 bits (400), Expect = 3e-41
 Identities = 74/161 (45%), Positives = 105/161 (65%)
 Frame = +1

Query: 169 FENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHY 348
           F N  RN  + + G  APK T TGTTIV + +  G+++GAD+RAT   +++DK+C+K+H 
Sbjct: 23  FSNCIRNQAMCKMGGKAPKLTSTGTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHK 82

Query: 349 LXSNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGA 528
           L  ++Y CGAGTAAD +  T+ ++  L L  L+TGR   V TA    K+ LF YQG+IGA
Sbjct: 83  LTESIYACGAGTAADLDQVTKMLSGNLRLLELNTGRKARVITALRQAKQHLFNYQGYIGA 142

Query: 529 ALVLGGVDRTGPHIYCIYPHGSVXKLPYATMGSGSLAAMAV 651
            L++GGVD TGPH+Y    +G+    P+   GSGS AA+ +
Sbjct: 143 YLLIGGVDPTGPHLYMCSANGTTMAFPFTAQGSGSYAAITI 183


>AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome beta
           subunit protein 1 protein.
          Length = 239

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 1/143 (0%)
 Frame = +1

Query: 208 GFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLXSNMYCCGAGTA 387
           GF   +   TGTT++ + Y  GV++G D+R +  + ++ +   KI  +  NM  C +G+A
Sbjct: 13  GFYPQEEISTGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSA 72

Query: 388 ADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVD-RTGP 564
           ADT+         +++  +   + V +  ++ + ++ L+ Y+  + A++++ G D   G 
Sbjct: 73  ADTQAIADIAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYREQLSASVLVAGWDEELGG 132

Query: 565 HIYCIYPHGSVXKLPYATMGSGS 633
            +Y I   G V +      GSGS
Sbjct: 133 QVYAIPIGGFVSRQRSTASGSGS 155


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 8/148 (5%)
 Frame = +1

Query: 232 KTGTTIVGIIY-----AD--GVILGADTRATENTVVSDKNCQKIHYLXSNMYCCGAGTAA 390
           + GTT +  +Y     AD  G+I+  D+RA+    +S K+  KI  +   M    AG AA
Sbjct: 62  RKGTTTLAFVYEPATPADKGGIIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAA 121

Query: 391 DTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGH-IGAALVLGGVDRTGPH 567
           D +  T+ VA    L  L    ++ V  A+      L+ Y+G  +    ++ G D+ GP 
Sbjct: 122 DCQFWTRIVAKYCTLYELREKTSITVSAASKYFANTLYGYRGQGLSVGSMVAGYDKKGPQ 181

Query: 568 IYCIYPHGSVXKLPYATMGSGSLAAMAV 651
           I+ +   G   +L   ++GSGSL A  +
Sbjct: 182 IFKVDSEGDRCQLKVCSVGSGSLNAYGI 209


>Z79754-8|CAB02097.1|  248|Caenorhabditis elegans Hypothetical
           protein F25H2.9 protein.
          Length = 248

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 9/148 (6%)
 Frame = +1

Query: 217 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLXSNMYCCGAGTAADT 396
           A +A K G+T +GI  ++GV+L A+ R+T   +V+D   +KI  +  ++    AG  AD+
Sbjct: 27  AIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDA-IEKISKVDQHIGVTFAGLIADS 85

Query: 397 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY---------QGHIGAALVLGGV 549
               +    + +       R + VE     +  +  ++             G A++  GV
Sbjct: 86  RTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFGVAMLFAGV 145

Query: 550 DRTGPHIYCIYPHGSVXKLPYATMGSGS 633
           D+ G  ++ + P G+       ++G+ S
Sbjct: 146 DQEGAKLFHLDPSGTFIDCKAKSIGAAS 173


>Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical
           protein C36B1.4 protein.
          Length = 253

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 6/144 (4%)
 Frame = +1

Query: 217 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLXSNMYCCGAGTAADT 396
           A +A K G+T VG+   D +++G + ++    +  D+  +KIH +  ++    AG +AD 
Sbjct: 23  AQEAVKKGSTAVGVRGKDCIVIGVEKKSIP-ALQDDRTIRKIHMIDDHVMLAFAGLSADA 81

Query: 397 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-----QGHIGAALVLGGVDRTG 561
            +       + +  +L     V V   +  +     R+     +   G ++++GG D  G
Sbjct: 82  RVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFDHDG 141

Query: 562 -PHIYCIYPHGSVXKLPYATMGSG 630
            P ++   P G+  +      G G
Sbjct: 142 TPRLFKTEPSGAYYEYVANATGRG 165


>U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta
           subunit protein 3 protein.
          Length = 204

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
 Frame = +1

Query: 235 TGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLXSNMYCCGAGTAADTEMTTQS 414
           TG T+V +   + V + +D R  E       + +K+H +   +Y   AG  +D     + 
Sbjct: 7   TGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEK 66

Query: 415 VASQLELQRLHTGRTVPVETAATLLKRMLF--RYQGHIGAALVLGGVDRTGPHIYCIYPH 588
           +  +  L  L   R +  +  + ++  + +  R+  +    LV G  D   P+I C+   
Sbjct: 67  IMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTI 126

Query: 589 GSV-XKLPYATMGSG 630
           G V     +  +G+G
Sbjct: 127 GCVSAPRDFVAVGTG 141


>AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome alpha
           subunit protein 3 protein.
          Length = 250

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 6/170 (3%)
 Frame = +1

Query: 160 DSRFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQK 339
           DSR   F     L Q  +     +  GT + GI+ ++G+++ A+ +     +      +K
Sbjct: 6   DSRTTIFSPEGRLYQVEYAMEAISHAGTCL-GILSSEGIVVAAERKNVHKLLDDSVMTEK 64

Query: 340 IHYLXSNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY--- 510
           ++ L  N+ C  AG  AD  +    +       R   G  +PVE     L     RY   
Sbjct: 65  VYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQI 124

Query: 511 --QGHIGAALVLGGVDR-TGPHIYCIYPHGSVXKLPYATMGSGSLAAMAV 651
             +   G +L+  G D+  G  +Y   P G+        +GS   AA+ +
Sbjct: 125 GGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTL 174


>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
           protein Y39D8B.1 protein.
          Length = 1372

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 344 WIFWQFLSETTVFSVALVSAPRITPSAYIIPTIVVPVLVALGAGNPF 204
           WIF   L    +    ++S P I   A + P  +VP++++ G G PF
Sbjct: 687 WIFVPVLVSPRILGAVILS-PVIMSPAILTPLCMVPIILSPGVGLPF 732


>Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical
           protein D1054.2 protein.
          Length = 231

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 9/151 (5%)
 Frame = +1

Query: 217 APKATKTGTTIVGIIYADGVILGADTRATEN--TVVSDKNCQKIHYLXSNMYCCGAGTAA 390
           A  A K G   VG+   DGV+L     ATEN  +V++D    K+  +  ++ C  +G   
Sbjct: 24  ALNAVKNGQPSVGLRAKDGVVL-----ATENVGSVLTDDQ-PKVEQISKHIGCVYSGMGP 77

Query: 391 DTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY--QGHI---GAALVLGGVDR 555
           D  +  +          +  G  +P     T +  ++  Y   G +   GA+L++ G D+
Sbjct: 78  DFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDK 137

Query: 556 T--GPHIYCIYPHGSVXKLPYATMGSGSLAA 642
               P ++   P G+        +G   + A
Sbjct: 138 NPGRPLLFQCDPSGAYFAWKATALGKNDVNA 168


>Z77661-2|CAB01184.4|  265|Caenorhabditis elegans Hypothetical
           protein F40G12.2 protein.
          Length = 265

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 313 VVSDKNCQKIHYLXSNMYCC 372
           V S +NC+K+H+L SN + C
Sbjct: 210 VKSQENCEKVHFLSSNFWNC 229


>Z81079-4|CAB03081.1|  236|Caenorhabditis elegans Hypothetical
           protein F39H11.5 protein.
          Length = 236

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = +1

Query: 229 TKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLXSNMYCCGAGTAADTEMTT 408
           T TGT+++ + Y  GV++  D   +   +   KN  + + +  N+     G  AD     
Sbjct: 14  TCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHWLQ 73

Query: 409 QSVASQLEL 435
             +  Q+ L
Sbjct: 74  NVIERQVLL 82


>AC006749-2|AAF60533.3|  731|Caenorhabditis elegans Hypothetical
           protein Y39D8B.3 protein.
          Length = 731

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -2

Query: 344 WIFWQFLSETTVFSVALVSAPRITPSAYIIPTIVVPVLVALGAGNPF 204
           W+F   L    +   A+V +P +     + P  +VPV+++ G G PF
Sbjct: 596 WVFVPVLVSPRILG-AVVLSPIVFSPVILSPLCLVPVILSPGVGLPF 641


>AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein5 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 533 WFWEVLTEPVLIFTAFILMDLXINY 607
           WF E L +PV+    F+++ L  NY
Sbjct: 94  WFMESLVQPVMALNRFVVITLNRNY 118


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 255 TNNCSTGLGGFGCRKP 208
           T+ CS GLGGFG  +P
Sbjct: 96  TSQCSPGLGGFGVYRP 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,003,474
Number of Sequences: 27780
Number of extensions: 271839
Number of successful extensions: 770
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)