Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J24
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    30   0.33 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   1.3  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   2.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   4.0  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    26   4.0  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    26   4.0  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    26   5.3  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   7.1  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   7.1  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    25   9.3  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   9.3  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 2/153 (1%)
 Frame = +3

Query: 81  STASGELSILHSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPE 260
           +TAS  L +  S  ++SFS       S L    S+S    VE +S     + T    T +
Sbjct: 240 TTASSTLPVSTSEATVSFSTDIPATPSTLSSPASSSSSYLVETSSTLTDSVFTTVTATSD 299

Query: 261 AVVEVY--IXGISSLGSSADFKSKKYPLXVXXYEPDTFDVLKHRINQRFTNGGNKLVNIN 434
           + V  Y  I  ++S   + +  S    L V   E      L   + Q F+     + + +
Sbjct: 300 SSVITYTLINSVTSSSETTNLPSSSSSL-VTIGESSFPSSLLSLLTQSFST----VRSTS 354

Query: 435 LSDSDQLLSYSNVLGDLXIPKVKKQSLQHLKSS 533
            S +DQL S S +   +  P V   +   L +S
Sbjct: 355 SSSTDQLTSASPISSSVISPSVSSPTSSILTNS 387


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 129 SFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDP 245
           SF  S    +SLL E+FSA LG    +++ WN LL   P
Sbjct: 32  SFLWSESAKKSLLNEVFSALLGY---DHTLWNTLLPERP 67


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 243  DQLSIIHSIRSSLQRKGQEKQKIFLLKDSRKFYWNQRNLTTQDYG 109
            DQL++     + ++    E Q    LK+SR  Y+N+ +L T  +G
Sbjct: 1126 DQLNLSVQRSALIKAAFPESQSNANLKNSRGIYYNEHDLVTDIFG 1170


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 120 ESLSFSGSSKTFESLLKEIFSASLGLSVEENSE 218
           E L  SGS K FE+ +   F+  L + V +N E
Sbjct: 119 ELLKKSGSYKGFEAFVNRTFAVLLRIVVNDNEE 151


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = -3

Query: 250 LNGSVINNPFHSEFSSTE-RPREAENISFKRLSKVLLEPEKLNDSGLW---RMLSS 95
           L G  ++NPF S+F + E R  EAE I  ++    +   ++  ++ +W   RM++S
Sbjct: 298 LLGDEVHNPF-SDFETVEDRAHEAEFIEKQKKHLSIEASDRFKENSMWEKNRMITS 352


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 111 HSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGL 230
           +  +S S +GS +  E     +F    GL  E   EWNG+
Sbjct: 321 YQEDSASEAGSIED-EQATDNVFGFGKGLEQENEEEWNGI 359


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 93  GELSILHSPESLSFSGSSK-TFESLLKEIFSASLGLSVEENSE 218
           G + +  SP +++ SGS   + E++  EIF  + GLS +  +E
Sbjct: 132 GMIVMGESPMNMAKSGSKNLSSENMATEIFEINSGLSAQSGTE 174


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 102 SILHSPE-SLSFSGSSKTFESLLKEIFSASLGLSVEENSEW 221
           S + SPE +L  S S+ TF+SL KE+      L+  ++ E+
Sbjct: 93  SNVSSPEKTLLTSASTSTFDSLKKELLPELPSLAYSDDDEF 133


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +3

Query: 354 EPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVLGDLXIPKVKKQSLQHLKSS 533
           + ++FD      ++ F    N  +N   S  + LLSY+ VLG      ++   L  +K  
Sbjct: 369 DENSFDSSSSCSSKVFLTTRNNSINSEDSAHEVLLSYNRVLGS----DIQGTILDRVKKG 424

Query: 534 VEEDFQFLSELAA 572
            + D Q  SEL +
Sbjct: 425 YQFDSQKNSELVS 437


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = -1

Query: 225 HSIRSSLQRKGQEKQKIFLLKDSRKFYWNQRNLTTQDYGGCLVRQRQLIPIIEEIKKTHT 46
           H ++  L++ G+E QK+    D+   Y     L     GG +     L+ +I+     +T
Sbjct: 611 HDLKLQLEKYGEEIQKVMTHPDNCLPYLQSGRLIQIKLGGIIFPWGVLVNVIKREFDPNT 670

Query: 45  R 43
           R
Sbjct: 671 R 671


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +3

Query: 303 SSADFKSKKYPLXVXXYEPDTFDVLKHRINQRFTNGGNKLVNI 431
           ++  ++  KY L    +   TFD+L H + +  +NGG+ ++ +
Sbjct: 139 TAQQYRQNKYQLH---FSRITFDLLLHFLFENVSNGGSIIIKL 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,862
Number of Sequences: 5004
Number of extensions: 46437
Number of successful extensions: 175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)