Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J24
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0199 - 23165776-23166259,23166356-23167128,23167633-231678...    29   2.4  
11_01_0711 - 5839385-5840311,5840815-5841111                           28   7.3  
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202     28   7.3  
08_02_0101 + 12374476-12376683                                         27   9.7  
04_04_1636 + 34951841-34954322,34954440-34954627,34955737-349558...    27   9.7  

>05_05_0199 -
           23165776-23166259,23166356-23167128,23167633-23167869,
           23167973-23168197
          Length = 572

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +3

Query: 78  VSTASGELSILHS-PESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNT 254
           ++ A G L +++S P SLS + S  +F SLL    S   G S+         L+T P + 
Sbjct: 1   MTAAPGSLPLVNSRPVSLSLAASRSSFSSLL----SGGAGSSLN--------LMTPPSSL 48

Query: 255 PEAVVEVYIXGISSLG 302
           P +    Y  G+SS G
Sbjct: 49  PPSSPSSYFGGVSSSG 64


>11_01_0711 - 5839385-5840311,5840815-5841111
          Length = 407

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +3

Query: 99  LSILHSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEAVVEVY 278
           L+I H    ++ +   KT    LKEI +  L     E+S +    +TD   T   V E  
Sbjct: 108 LTIAHK---ITLANKMKTISDELKEITNQHLSFRFTEDSSYKEHRVTDKRETSSKVEEAL 164

Query: 279 IXG 287
           + G
Sbjct: 165 VVG 167


>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
          Length = 711

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 312 DFKSKKYPLXVXXYEPDTFDVLKHRINQRFTNG 410
           DF    YP+    Y P  FDV  H   +RF NG
Sbjct: 311 DFGGDMYPVEDYEYAPADFDVRAHHERERF-NG 342


>08_02_0101 + 12374476-12376683
          Length = 735

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 23/80 (28%), Positives = 34/80 (42%)
 Frame = +3

Query: 120 ESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEAVVEVYIXGISSL 299
           +S++ SG     ES    I S   G +     E  G L+    N  E V ++ I G+   
Sbjct: 633 DSMTKSGYLPHLESYRIIISSLCEGGNFRTAKEVFGDLLLKESNYDEIVWKILIYGLLQK 692

Query: 300 GSSADFKSKKYPLXVXXYEP 359
           GS A+F S    +    Y+P
Sbjct: 693 GSVAEFSSLLSVMKEHGYQP 712


>04_04_1636 +
           34951841-34954322,34954440-34954627,34955737-34955838,
           34956101-34956177,34956258-34956319,34956504-34956511
          Length = 972

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +3

Query: 210 NSEWNGLL---ITDPFNTPEAVVEVYIXGIS-SLGSSADFKSK 326
           N  WN      ++DP N PE  +E Y+  I+ S+  S  F  K
Sbjct: 48  NPVWNERFYFNVSDPSNLPELALEAYVYNINRSIDGSRSFLGK 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,461,582
Number of Sequences: 37544
Number of extensions: 254499
Number of successful extensions: 682
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)