Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J24
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical...    29   2.8  
AF016441-1|AAB65911.3|  383|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z69661-6|CAA93492.4|  299|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 21/119 (17%)
 Frame = -3

Query: 385 LCFNTSKVSGSXSXTXKGYFLD-LKSAELP--------RLDMPXM*TSTTASGVLNG--- 242
           L  N +KV+GS     KG   D L + ELP         + M         +G+LN    
Sbjct: 26  LSLNGAKVTGSSLSEAKGLIADMLMNKELPGNVASCLRAVTMLLEQRPLPLNGLLNDFGL 85

Query: 241 -SVINNPFHSEFS--STERPREAENISFKRLSK------VLLEPEKLNDSGLWRMLSSP 92
            SV+ NP+  E       +PR   NI+F  ++       V  EP K   S  W+  +SP
Sbjct: 86  PSVVENPYGGESMVVGASKPR-ISNITFSTVTSATGLPTVPAEPNKARSSSYWKTEASP 143


>Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 21/119 (17%)
 Frame = -3

Query: 385 LCFNTSKVSGSXSXTXKGYFLD-LKSAELP--------RLDMPXM*TSTTASGVLNG--- 242
           L  N +KV+GS     KG   D L + ELP         + M         +G+LN    
Sbjct: 26  LSLNGAKVTGSSLSEAKGLIADMLMNKELPGNVASCLRAVTMLLEQRPLPLNGLLNDFGL 85

Query: 241 -SVINNPFHSEFS--STERPREAENISFKRLSK------VLLEPEKLNDSGLWRMLSSP 92
            SV+ NP+  E       +PR   NI+F  ++       V  EP K   S  W+  +SP
Sbjct: 86  PSVVENPYGGESMVVGASKPR-ISNITFSTVTSATGLPTVPAEPNKARSSSYWKTEASP 143


>AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 21/119 (17%)
 Frame = -3

Query: 385 LCFNTSKVSGSXSXTXKGYFLD-LKSAELP--------RLDMPXM*TSTTASGVLNG--- 242
           L  N +KV+GS     KG   D L + ELP         + M         +G+LN    
Sbjct: 26  LSLNGAKVTGSSLSEAKGLIADMLMNKELPGNVASCLRAVTMLLEQRPLPLNGLLNDFGL 85

Query: 241 -SVINNPFHSEFS--STERPREAENISFKRLSK------VLLEPEKLNDSGLWRMLSSP 92
            SV+ NP+  E       +PR   NI+F  ++       V  EP K   S  W+  +SP
Sbjct: 86  PSVVENPYGGESMVVGASKPR-ISNITFSTVTSATGLPTVPAEPNKARSSSYWKTEASP 143


>AF016441-1|AAB65911.3|  383|Caenorhabditis elegans Hypothetical
           protein M03F8.4 protein.
          Length = 383

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +3

Query: 459 SYSNVLGDLXIPKVKKQSLQHLKSSVEEDFQFLSELAALKAVTEKVESGAIXAXNII 629
           ++ N   +  +P +K ++L    S + ED    S+  ALK +  K++S      NI+
Sbjct: 243 TFFNDFDEFFVPVIKSRTLFETISGLFEDPTIGSQRTALKYINAKIKSAPYSLKNIV 299


>Z69661-6|CAA93492.4|  299|Caenorhabditis elegans Hypothetical
           protein F48F7.2 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -1

Query: 273 LRQLLQEC*TDQLSIIHSIRSSLQRKGQEKQKIFLLKDSRKFYWNQRNLTTQDY 112
           LR+L+++   D L     ++S  +++ ++ Q + LLKD+     N  N T QDY
Sbjct: 89  LRKLVRQAEDDFLEFTKQVQSVTEKRMRQNQ-LELLKDNLNKLINLFNETHQDY 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,007,178
Number of Sequences: 27780
Number of extensions: 243128
Number of successful extensions: 685
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)