Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J24
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.7  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 171 LLKDSRKFYWNQRNLTTQD 115
           LLKD  K +W +R L   D
Sbjct: 179 LLKDPVKEFWERRTLQISD 197


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 171 LLKDSRKFYWNQRNLTTQD 115
           LLKD  K +W +R L   D
Sbjct: 232 LLKDPVKEFWERRTLQISD 250


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 351 YEPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVL 476
           +E D+F V KH    R +  G    N+  + +   +  S V+
Sbjct: 707 WEGDSFKVSKHEEVSRTSTAGQFPTNVATTVTSMSIDQSTVI 748


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 241 IRSTLLKQLSKFTLXAYPVWGVPL 312
           +RS  + +LS   L  +PVW V L
Sbjct: 889 LRSLEILRLSGNRLVTFPVWQVTL 912


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 597 PPFR*QLLRLQVHLEIGSLL 538
           PPFR +  R +VH ++ S L
Sbjct: 63  PPFRAEDYRQEVHAQVYSCL 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,164
Number of Sequences: 438
Number of extensions: 2971
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)