Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J22
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    163   8e-41
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   163   8e-41
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858...    30   1.7  
05_02_0043 + 5964749-5966406,5966725-5966791,5967174-5967329,596...    27   9.2  
03_06_0712 - 35683814-35684065,35685296-35685466                       27   9.2  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  163 bits (397), Expect = 8e-41
 Identities = 76/132 (57%), Positives = 97/132 (73%)
 Frame = +1

Query: 199 KVEKWFGSKKELAAVRTVCSHVXNMIKGVTKGFQYKMRAVYAHFPINCVTTXGNSIIXIR 378
           +V+ WFG+++ +AA+RT  SHV N+I GVTKG++YKMR VYAHFPIN   T  N+ I IR
Sbjct: 55  QVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIR 114

Query: 379 NFLGXKYITRVKMAPGVTVVNSPKQXDELIIEGNSLEDVSSSAALIQQSTTVXNKDIXKF 558
           NFLG K + +V M  GVT++ S K  DEL+++GN +E VS SAALI Q   V NKDI KF
Sbjct: 115 NFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKF 174

Query: 559 LDGLYVSXKTTV 594
           LDG+YVS K T+
Sbjct: 175 LDGIYVSDKGTI 186



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 24/48 (50%), Positives = 39/48 (81%)
 Frame = +3

Query: 39  MKQIVXNQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV 182
           MK I+ ++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLL 48


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  163 bits (397), Expect = 8e-41
 Identities = 76/132 (57%), Positives = 97/132 (73%)
 Frame = +1

Query: 199 KVEKWFGSKKELAAVRTVCSHVXNMIKGVTKGFQYKMRAVYAHFPINCVTTXGNSIIXIR 378
           +V+ WFG+++ +AA+RT  SHV N+I GVTKG++YKMR VYAHFPIN   T  N+ I IR
Sbjct: 48  QVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIR 107

Query: 379 NFLGXKYITRVKMAPGVTVVNSPKQXDELIIEGNSLEDVSSSAALIQQSTTVXNKDIXKF 558
           NFLG K + +V M  GVT++ S K  DEL+++GN +E VS SAALI Q   V NKDI KF
Sbjct: 108 NFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKF 167

Query: 559 LDGLYVSXKTTV 594
           LDG+YVS K T+
Sbjct: 168 LDGIYVSDKGTI 179



 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 22/39 (56%), Positives = 33/39 (84%)
 Frame = +3

Query: 66  VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV 182
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLL 39


>07_03_0446 -
           18285132-18285221,18285437-18285499,18285805-18285867,
           18286079-18286129,18286413-18286506,18286696-18286856,
           18287089-18287145,18287380-18287493,18287934-18287999,
           18288063-18288266,18289207-18289284,18289669-18289788,
           18290425-18290491,18290635-18290735,18290820-18290936,
           18292024-18292107,18292181-18292309,18292385-18292510,
           18292622-18292696,18292814-18292947,18293032-18293137,
           18293220-18293276,18294387-18294573,18295244-18295407,
           18296129-18296353,18296538-18296744,18297043-18297375,
           18297604-18297993
          Length = 1220

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -3

Query: 248 VLTAASSFLDPNHFSTFRRARVYHANVNSQVFEVPFENSAGPFNCHQTRFH 96
           ++   SS ++  HF     A +Y   +  + F+  F N   PFN H   F+
Sbjct: 688 IIETTSSSVEGCHFGKI--AVLYRRQITGKAFQASFRNRKIPFNIHGVAFY 736


>05_02_0043 +
           5964749-5966406,5966725-5966791,5967174-5967329,
           5967782-5967865,5968020-5968073
          Length = 672

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
 Frame = -3

Query: 278 LIMFXTCEQTVLTAASSFLDP-NHFSTFRRARVYHANVNSQVFEVPFENSAGPFNCHQTR 102
           +++F T  QTVLT   S++DP  H  TF+ A     +       VP    +  + C    
Sbjct: 533 IVLFCTVAQTVLTVL-SYVDPRKHECTFKSATTLQCDHVIYDASVPILGVSLFYRCFINL 591

Query: 101 FHMDRKPVWDFDFLIXYNLLHVWA 30
           F     P   FD      LLH  A
Sbjct: 592 FSSFLIPQGAFDKEGYPELLHFHA 615


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +3

Query: 135 VLKRNF-KHLAVDIRMVNPRSPE 200
           VLKR+F +  AVD+R +NP+ P+
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPK 27


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,335,377
Number of Sequences: 37544
Number of extensions: 288865
Number of successful extensions: 539
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)