Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J22
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   177   4e-45
AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical ...    31   0.88 
AC006790-5|AAF60733.1|  330|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z83239-5|CAB05809.1|  160|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U53147-5|AAA96116.1|  153|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AF047657-12|AAK18941.3|  367|Caenorhabditis elegans Serpentine r...    27   8.2  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  177 bits (432), Expect = 4e-45
 Identities = 83/136 (61%), Positives = 100/136 (73%)
 Frame = +1

Query: 199 KVEKWFGSKKELAAVRTVCSHVXNMIKGVTKGFQYKMRAVYAHFPINCVTTXGNSIIXIR 378
           +V KWFG +KELAA+RTVCSH+ NMIKGVT GF+YKMR+VYAHFPIN     GN  + IR
Sbjct: 54  RVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIR 113

Query: 379 NFLGXKYITRVKMAPGVTVVNSPKQXDELIIEGNSLEDVSSSAALIQQSTTVXNKDIXKF 558
           NFLG K + RV +  GV    S  Q DE+++EGN ++ VS +AA IQQST V  KDI KF
Sbjct: 114 NFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKF 173

Query: 559 LDGLYVSXKTTVVLHD 606
           LDG+YVS KTT+V  D
Sbjct: 174 LDGIYVSEKTTIVPTD 189



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 20/48 (41%), Positives = 33/48 (68%)
 Frame = +3

Query: 39  MKQIVXNQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV 182
           MK I  N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERI 48


>AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical
           protein F35B3.3 protein.
          Length = 113

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -2

Query: 597 HNSCFXRYIKTIQELXDILIXDCSRLLNESSRARDIFQR 481
           +N+C  R IK +  L  +L  + SRL N  SR RD+F++
Sbjct: 25  NNNCKLRQIKPVPNLTRLL--EESRLTNSLSRLRDVFKK 61


>AC006790-5|AAF60733.1|  330|Caenorhabditis elegans Hypothetical
           protein Y49F6B.7 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +1

Query: 427 VTVVNSPKQXD-ELIIEG-NSLEDVSSSAALIQQSTTVXNKDIXKFLD 564
           VT+VNSP++ D +++++G N +E    S  +I  S  V  K++ + +D
Sbjct: 262 VTIVNSPRRLDIKVLMKGVNYVECYDKSEEVIVDSEAVRVKNLYQIVD 309


>Z83239-5|CAB05809.1|  160|Caenorhabditis elegans Hypothetical
           protein T09F5.9 protein.
          Length = 160

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -1

Query: 226 FWIRTISQPSGERGFTMRMSTAKCLKFL 143
           F I +IS PSG   FT+ +ST++C KF+
Sbjct: 16  FPIASISCPSG---FTLLVSTSRCAKFI 40


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 167 NSQVFEVPFENSAGPFNCHQTRFHMDR 87
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 167 NSQVFEVPFENSAGPFNCHQTRFHMDR 87
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>U53147-5|AAA96116.1|  153|Caenorhabditis elegans Hypothetical
           protein C01B7.5 protein.
          Length = 153

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 194 RARVYHANVNSQVFEVPFENSAGPFNC 114
           R ++    V  +  E+P EN A  FNC
Sbjct: 98  RRKIIQLKVRRRALEIPAENEASVFNC 124


>AF047657-12|AAK18941.3|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein4 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -1

Query: 274 SCSXHVNRLSSRRQAPFWIRTISQPSGERGFTMRMSTAKCLKFLLRTPRGPLTVTRRDFT 95
           SC    + L+    +PFWIR + + + E   TM    A     LL  P   L +T+R  +
Sbjct: 72  SCDIISHTLTFLAFSPFWIREVRKKNQECFLTMTYRDA----VLLLYPVIVLDITQRSSS 127

Query: 94  W 92
           W
Sbjct: 128 W 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,308,515
Number of Sequences: 27780
Number of extensions: 260131
Number of successful extensions: 555
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)