Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J21
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    27   2.3  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   7.2  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   9.5  

>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 414 IFYQNRGYCMKNYTDQKEDFSLWTXRIG 497
           +FY + G+CM+   D    F + T + G
Sbjct: 94  VFYHSSGWCMRGVRDDDSLFKILTPKFG 121


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 266 NLHKYIDMRHKQLGPIFYXRLTGKTKLVFISDPT 367
           +L+KYI + H +L PI Y         +F S+P+
Sbjct: 130 DLNKYIPLSHLKLPPIVYEFDRNVEPAIFPSNPS 163


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = -2

Query: 513  IRRLINQSXPSIKKSPLFDPYNFSYSTHGSGKICAGYFXXKFKNKLFM*VGSLIKTSFVF 334
            +R+L      ++ K+    PY   Y+          YF    K ++F  +G  +  ++V 
Sbjct: 982  LRKLCQSFLVALSKNIENIPYALCYTAAQLKNSLQRYFPAAHKEEIFGVIGKFVYWAYVA 1041

Query: 333  PVNLS 319
            PV +S
Sbjct: 1042 PVLVS 1046


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,236
Number of Sequences: 5004
Number of extensions: 51206
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)