Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_J21
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0401 + 29038306-29038529,29038815-29038967,29039489-290402... 36 0.028
04_04_0848 - 28677545-28677635,28677760-28677887,28678020-286781... 35 0.049
07_03_0391 - 17587144-17587323,17587460-17587566,17587664-175877... 33 0.26
06_01_1085 - 8886868-8887556,8887629-8888574 32 0.34
12_01_0259 - 1905291-1905393,1905536-1905672,1905787-1905893,190... 31 0.60
11_01_0261 - 1989988-1990090,1990232-1990368,1990483-1990589,199... 31 0.60
11_03_0126 + 10371536-10371596,10372467-10372544,10373968-103741... 29 2.4
06_01_0622 - 4527710-4528266,4528302-4528303,4535590-4535777 29 4.2
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124... 28 5.6
07_03_0622 + 20031385-20032341,20032423-20032953 28 7.4
10_08_0384 - 17430316-17430470,17430647-17430813,17431234-174315... 27 9.8
06_01_0640 - 4644576-4645007,4645090-4646163,4646196-4646258 27 9.8
06_01_0639 + 4641665-4642846,4642929-4643360 27 9.8
04_04_1453 + 33710202-33710516 27 9.8
>01_06_0401 +
29038306-29038529,29038815-29038967,29039489-29040296,
29040393-29040488,29040982-29041251
Length = 516
Score = 35.9 bits (79), Expect = 0.028
Identities = 28/116 (24%), Positives = 53/116 (45%)
Frame = +2
Query: 170 HKSLRTIXXMPHKKSLPIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYXRLTGKTKLV 349
++ R + +P LP+IG L A G ++ + +H GP+F + G+ L+
Sbjct: 31 YEPYRKVWHVPGPVPLPLIGHLHLL--AMHGPDVFSVLARKH---GPVFRFHM-GRQPLI 84
Query: 350 FISDPTHMKSLFLNLXXKYPAHILPEPWVLYEKLYGSKRGLFFMDGXDWLINRRIM 517
++D K + + P +P P + ++ K+GLFF+ G W R ++
Sbjct: 85 IVADAELCKEVGVKKFKSIPNRSMPSP-IANSPIH--KKGLFFIRGPRWTSMRNMI 137
>04_04_0848 -
28677545-28677635,28677760-28677887,28678020-28678126,
28678242-28678320,28678426-28678515,28678603-28678854,
28680351-28680497,28680711-28681035,28681177-28681406
Length = 482
Score = 35.1 bits (77), Expect = 0.049
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 200 PHKKSLPIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYXRLTGKTKLVFISDPTHMKS 379
P PIIG F F A ++ Y R ++ GP+F L G+ ++ + DP +
Sbjct: 44 PGSMGFPIIGETFQFFRASPSIDMPSYYKQRLERYGPLFKTSLVGRPVIISL-DPEVNRF 102
Query: 380 LF 385
+F
Sbjct: 103 IF 104
>07_03_0391 -
17587144-17587323,17587460-17587566,17587664-17587742,
17587850-17587939,17588337-17588588,17588748-17588894,
17589071-17589246,17589303-17589394,17589582-17589673
Length = 404
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 218 PIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYXRLTGKTKLVFISDPTHMKSLF 385
P++G F F A ++ Y R ++ GP+F L G+ LV DP + +F
Sbjct: 4 PVVGETFQFFRASPSVDMPSYYKQRLERYGPLFKTSLVGQ-PLVVSLDPEVNRFIF 58
>06_01_1085 - 8886868-8887556,8887629-8888574
Length = 544
Score = 32.3 bits (70), Expect = 0.34
Identities = 34/143 (23%), Positives = 59/143 (41%)
Frame = +2
Query: 212 SLPIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYXRLTGKTKLVFISDPTHMKSLFLN 391
+LP+IG +L G G++ H+ + ++ GP+F RL G + + +S + +++ +
Sbjct: 48 ALPVIG---NLHQLGRGRH-HRALRELARRHGPLFQLRL-GSVRALVVSSASMAEAVLRH 102
Query: 392 LXXKYPAHILPEPWVLYEKLYGSKRGLFFMDGXDWLINRRIMNKHLLRXXSXVWLRAPIR 571
+ P+ LYG + F G W RR+ HLL RA
Sbjct: 103 QDHVFCGR--PQQHTARGTLYGCRDVAFSPYGERWRRLRRVAVVHLLSARRVDSFRALRE 160
Query: 572 TAVFHFICNWKLXAQSGNFSPNL 640
V F+ + + G NL
Sbjct: 161 EEVASFVNRIRAASGGGGGVVNL 183
>12_01_0259 -
1905291-1905393,1905536-1905672,1905787-1905893,
1906012-1906090,1906256-1906342,1906987-1907265,
1907401-1908114
Length = 501
Score = 31.5 bits (68), Expect = 0.60
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 200 PHKKSLPIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYXRLTGKTKLVFISDPTHMKS 379
P LP+IG L SA N +ID R + G +F + G+ + VF +DP +
Sbjct: 44 PGSTGLPLIGETLRLISAYKTPNPEPFIDERVARHGGVFTTHVFGE-RTVFSADPAFNRL 102
Query: 380 L 382
L
Sbjct: 103 L 103
>11_01_0261 -
1989988-1990090,1990232-1990368,1990483-1990589,
1990708-1990786,1990952-1991038,1991688-1991966,
1992109-1992822
Length = 501
Score = 31.5 bits (68), Expect = 0.60
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 200 PHKKSLPIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYXRLTGKTKLVFISDPTHMKS 379
P LP+IG L SA N +ID R + G +F + G+ + VF +DP +
Sbjct: 44 PGSTGLPLIGETLRLISAYKTPNPEPFIDERVARHGGVFTTHVFGE-RTVFSADPAFNRL 102
Query: 380 L 382
L
Sbjct: 103 L 103
>11_03_0126 +
10371536-10371596,10372467-10372544,10373968-10374127,
10374286-10374610,10374708-10374860,10374985-10375236,
10375356-10375445,10375543-10375621,10375712-10375818,
10375921-10376048,10376329-10376419
Length = 507
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +2
Query: 200 PHKKSLPIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYXRLTGKTKLVFISDPTHMKS 379
P PI+G F F ++ Y R ++ GPIF + G+ +V DP +
Sbjct: 67 PGSMGFPIVGETFQFFRTSPSIDMPIYYKRRLERYGPIFKTNIGGQ-HVVISLDPEVNQF 125
Query: 380 LF 385
+F
Sbjct: 126 IF 127
>06_01_0622 - 4527710-4528266,4528302-4528303,4535590-4535777
Length = 248
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 422 PEPWVLYEKLYGSKRGLFFMDGXDWLINRRIMN 520
PEP + L G+ GL F++G DW+ +RR+++
Sbjct: 16 PEPGPSFLALIGN--GLAFVNGDDWVRHRRVVH 46
>03_06_0744 +
35910512-35910569,35911145-35911325,35912332-35912419,
35912541-35912726,35913591-35913725,35913803-35913862,
35914609-35914698,35915384-35915515,35916039-35916183,
35916266-35916439,35916629-35916692,35916778-35916847,
35917328-35917445,35918258-35918280,35918398-35918499,
35919831-35920250,35920327-35920563
Length = 760
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +2
Query: 326 LTGKTKLVFISDPTHMKSLFLNLXXKYPAHILPEPWVLYEKLYGSKRGLF--FMDGXDWL 499
L G+T + D + +L +NL K HIL E + L+ S RG F + D++
Sbjct: 202 LNGQTGYDLLPDSGKVIALDVNLPVKQSFHILHEQGIPVAPLWDSFRGQFVGLLSPLDFI 261
Query: 500 INRRIMNKH 526
+ R + H
Sbjct: 262 LILRELETH 270
>07_03_0622 + 20031385-20032341,20032423-20032953
Length = 495
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +2
Query: 200 PHKKSLPIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYXRLTGKTKLVFISDPTHMKS 379
P LP++G L A +++ R + GP+ L G V ++ P K+
Sbjct: 39 PGSLGLPLVGQSLSLLRAMRRNTAERWLQGRIDRYGPVSKLSLFG-APTVLLAGPAANKA 97
Query: 380 LFLN 391
+FL+
Sbjct: 98 VFLS 101
>10_08_0384 -
17430316-17430470,17430647-17430813,17431234-17431531,
17431797-17431880,17432321-17432437,17433883-17433976,
17434893-17435035,17435134-17435297,17435753-17435918,
17436394-17436560,17436894-17437020,17439805-17439901
Length = 592
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 405 IRHIFYQNRGYCMKNYTDQKEDFSL 479
I+H+F Q +G+ NYT ED L
Sbjct: 444 IQHVFLQTKGFMQGNYTWNIEDSKL 468
>06_01_0640 - 4644576-4645007,4645090-4646163,4646196-4646258
Length = 522
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +2
Query: 329 TGKTKLVFISDPTHMKSLFLNLXXKYPAHILPEPWVLYEKLYGSKRGLFFMDGXDWLINR 508
+G T + + D +K + + Y PEP +L L G+ GL F+ G DW +R
Sbjct: 95 SGATPALCVGDYAMVKQILSDRTGLY-GKPEPEPSIL--ALIGN--GLIFIGGDDWARHR 149
Query: 509 RIMN 520
R+++
Sbjct: 150 RVVH 153
>06_01_0639 + 4641665-4642846,4642929-4643360
Length = 537
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 422 PEPWVLYEKLYGSKRGLFFMDGXDWLINRRIMN 520
P+P L+G+ GL F++G DW +RR+++
Sbjct: 135 PDPGASILALFGN--GLAFVNGDDWARHRRVVH 165
>04_04_1453 + 33710202-33710516
Length = 104
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 9 PGTRCRIVFSRLLKWLLIS 65
P RCR+ SRL++W L++
Sbjct: 43 PAGRCRLAVSRLVRWRLVA 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,127,450
Number of Sequences: 37544
Number of extensions: 291225
Number of successful extensions: 508
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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