Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J21
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    25   0.48 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    24   1.1  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    24   1.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.5  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.8  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 182 RTIXXMPHKKSLPIIGTKFDLFSAGGGKNLHKYID 286
           +T+  +P   SLPI GT++ +FS  G   L+K  D
Sbjct: 48  KTVSKVPGPFSLPIFGTRW-IFSCIGYYKLNKIHD 81


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 56  TYIRILFNLKMHRFPSMSS 112
           T++R+L +L MH +P + S
Sbjct: 126 TFLRVLLHLAMHDYPPLVS 144


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 56  TYIRILFNLKMHRFPSMSS 112
           T++R+L +L MH +P + S
Sbjct: 94  TFLRVLLHLAMHDYPPLVS 112


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/50 (22%), Positives = 22/50 (44%)
 Frame = +2

Query: 98  PSMSSIRSAVRSRNSNRCSMSTKPHKSLRTIXXMPHKKSLPIIGTKFDLF 247
           P  S+  + VR+  ++ CS++  PH+          +K+   +G     F
Sbjct: 332 PMTSTKSTIVRNHLNSTCSVTNSPHQKKLRFHLAKERKASTTLGIIMSAF 381


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +1

Query: 433 GTV*KIIRIKKRTFLYGRXGLVD*STNYEQTST 531
           G   K+I++KK  +  G+  ++D S    ++ T
Sbjct: 253 GLTKKVIQLKKEEYKSGKRNIIDNSAQKTESKT 285



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 197 MPHKKSLPIIGTKFDLFSA 253
           +P   +LP+IG   DLF +
Sbjct: 44  IPGPPALPLIGNALDLFGS 62


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 440 TVPTVLVKYVPDIFXXNLRINFSCELG 360
           TVP  + KYV  I   + RI+ + +LG
Sbjct: 314 TVPLHMQKYVQMIHDLHTRISTAIDLG 340


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 440 TVPTVLVKYVPDIFXXNLRINFSCELG 360
           TVP  + KYV  I   + RI+ + +LG
Sbjct: 314 TVPLHMQKYVQMIHDLHTRISTAIDLG 340


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 313 ILRXINRKDKTCLY-QRPNSHE 375
           ++R +  K+KTC Y   P++ E
Sbjct: 377 LMRTVRGKEKTCYYPYHPSTQE 398


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 313 ILRXINRKDKTCLY-QRPNSHE 375
           ++R +  K+KTC Y   P++ E
Sbjct: 377 LMRTVRGKEKTCYYPYHPSTQE 398


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,596
Number of Sequences: 438
Number of extensions: 3588
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)