Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J17
         (653 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B5020 Cluster: PREDICTED: similar to GA19143-PA...    39   0.12 
UniRef50_Q9VC40 Cluster: CG5805-PA; n=6; Endopterygota|Rep: CG58...    37   0.49 

>UniRef50_UPI00015B5020 Cluster: PREDICTED: similar to GA19143-PA;
           n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
           GA19143-PA - Nasonia vitripennis
          Length = 211

 Score = 38.7 bits (86), Expect = 0.12
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = +1

Query: 580 ITTIXWSMMDKSKFFPLYTMSSFT 651
           I TI W MMDK+KFFPL  +SSF+
Sbjct: 10  IRTIEWDMMDKTKFFPLSMLSSFS 33


>UniRef50_Q9VC40 Cluster: CG5805-PA; n=6; Endopterygota|Rep:
           CG5805-PA - Drosophila melanogaster (Fruit fly)
          Length = 339

 Score = 36.7 bits (81), Expect = 0.49
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +1

Query: 580 ITTIXWSMMDKSKFFPLYTMSSFT 651
           I TI W MM+K+KFFPL  +SSF+
Sbjct: 29  IRTIEWDMMNKTKFFPLSMLSSFS 52


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 474,217,937
Number of Sequences: 1657284
Number of extensions: 7171863
Number of successful extensions: 14529
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14529
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)