Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J16
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    29   0.57 
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    28   0.99 
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    26   4.0  
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   4.0  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.0  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   7.0  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   9.2  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   9.2  

>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 598 FDVNQAAGRKTHVKSICNITKEHSSLIPHNV 506
           +D+N  A R   +K++C I +  S L+P+ V
Sbjct: 469 YDLNTKASRNRLIKALCTIPRTSSFLVPYYV 499


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 374 LTPIGVMRLPEPMDTIM*ISPAPSLY 297
           +TPIG  R P P+DT + + P+   Y
Sbjct: 709 ITPIGSFRRPYPLDTTLIVKPSGQPY 734


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 625 IDICRHNPRFDVNQAAGRKTHVK-SICNITKEH-SSLIPHNVGKGQEDD 485
           +D    +P   VNQ+  RKTH + +I  + ++  SS +P+    G E +
Sbjct: 165 VDEMDGDPSSQVNQSRSRKTHSELAITKLLRQQVSSFMPYIDSSGSESE 213


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 377 FHVFLPTL*TSLCILSFY-YFKXXXXXXXXXXXXQNVVIFLSFSYIM 514
           FH+FLP + T L   +FY YF                 I L F+Y+M
Sbjct: 78  FHIFLPFILTLLLYHNFYNYFDQALADLNSVVKYVIETIVLIFTYVM 124


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 377 FHVFLPTL*TSLCILSFY-YFKXXXXXXXXXXXXQNVVIFLSFSYIM 514
           FH+FLP + T L   +FY YF                 I L F+Y+M
Sbjct: 78  FHIFLPFILTLLLYHNFYNYFDQALADLNSVVKYVIETIVLIFTYVM 124


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 592 VNQAAGRKTHVKSICNITKEHSS 524
           V  A+ + TH  SI N+T  HSS
Sbjct: 293 VGSASSQGTHEYSIINLTSNHSS 315


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 113  FLPINLFLINKLIFRLC 163
            +LPIN FL+   I RLC
Sbjct: 1298 YLPINAFLLRGYIARLC 1314


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 542 DVAYGFDMCFTTGCLVNVKPRVMSAYIYCHVV 637
           +  Y FD+CF+T        ++ S Y+  H++
Sbjct: 355 ETGYSFDLCFSTLQTFENNIQISSEYLQQHLI 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,469
Number of Sequences: 5004
Number of extensions: 52112
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)