Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J16
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ...    29   2.8  
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei...    29   2.8  
AF125952-8|AAD14692.1|  349|Caenorhabditis elegans Seven tm rece...    29   3.7  
AC006722-14|AAK68413.1|  349|Caenorhabditis elegans Seven tm rec...    29   3.7  
U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
            W02B9.1b protein.
          Length = 2920

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 413  TDWFKVLAEKHGKLTPIGVMRLPEPMD 333
            +D+F V  +K  K + +GV+R+ +P+D
Sbjct: 1705 SDYFYVTTDKDSKQSSVGVLRVKQPLD 1731


>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
            W02B9.1b protein.
          Length = 2920

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 413  TDWFKVLAEKHGKLTPIGVMRLPEPMD 333
            +D+F V  +K  K + +GV+R+ +P+D
Sbjct: 1705 SDYFYVTTDKDSKQSSVGVLRVKQPLD 1731


>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
            protein W02B9.1b protein.
          Length = 2920

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 413  TDWFKVLAEKHGKLTPIGVMRLPEPMD 333
            +D+F V  +K  K + +GV+R+ +P+D
Sbjct: 1705 SDYFYVTTDKDSKQSSVGVLRVKQPLD 1731


>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
            protein.
          Length = 2920

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 413  TDWFKVLAEKHGKLTPIGVMRLPEPMD 333
            +D+F V  +K  K + +GV+R+ +P+D
Sbjct: 1705 SDYFYVTTDKDSKQSSVGVLRVKQPLD 1731


>AF125952-8|AAD14692.1|  349|Caenorhabditis elegans Seven tm
           receptor protein 76 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -2

Query: 162 HNLNINLLMRNKF----MGRKLPAILCFFVDY*G*ICVYLALITDQLLIKHSCXM 10
           HN N N LM   F      R++P IL     + G     LA IT+Q + +HSC M
Sbjct: 67  HNFN-NYLMYFSFNFWMKSREIPEILIMV--WAGLYATILAFITNQFVYRHSCLM 118


>AC006722-14|AAK68413.1|  349|Caenorhabditis elegans Seven tm
           receptor protein 265 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -2

Query: 162 HNLNINLLMRNKF----MGRKLPAILCFFVDY*G*ICVYLALITDQLLIKHSCXM 10
           HN N N LM   F      R++P IL     + G     LA IT+Q + +HSC M
Sbjct: 67  HNFN-NYLMYFSFNFWMKSREIPEILIMV--WAGLYATILAFITNQFVYRHSCLM 118


>U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical
           protein ZK430.5 protein.
          Length = 1276

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 156 LNINLLMRNKFMGRKLPAILCFFVDY*G*ICVYLALITD 40
           +  NL +R  F    +PA LCFF  Y G +C  +A + D
Sbjct: 135 MKCNLEVRRFFAA--IPAKLCFFYFYTGELCTAVACLID 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,144,108
Number of Sequences: 27780
Number of extensions: 288061
Number of successful extensions: 623
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)