Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J16
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 394 WQKNMESSRLSVLCVFRSPWTL*CEYLQ 311
           WQ  + ++RL  L +  +PW+  C++LQ
Sbjct: 908 WQVTL-NARLVELSLGSNPWSCRCKFLQ 934


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 536 FCDVAYGFDMCFTTGCLVNVKPRVMSAYIY 625
           FCD    FD+  +T  ++N+    +  YI+
Sbjct: 97  FCDTWIAFDVMCSTASILNLCAISLDRYIH 126


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 320 ISPAPSLYYNTFEMIDGDRIFFTPDITSVEYLRVLNSGL 204
           I+P P+  YN  +  DG    +   +     L +L++G+
Sbjct: 103 IAPYPNWSYNDVKYCDGLTSVYRMQVDKCGRLWILDTGI 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,289
Number of Sequences: 438
Number of extensions: 3684
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)