Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J15
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   4.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   4.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.8  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 648 SQRWSRGSTPRSLNTS 601
           +Q WSRG+T  SL+ S
Sbjct: 20  AQHWSRGNTWLSLDNS 35


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 648 SQRWSRGSTPRSLNTS 601
           +Q WSRG+T  SL+ S
Sbjct: 20  AQHWSRGNTWLSLDNS 35


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +3

Query: 429 VLDPAQDHQPITEASYVNIPVIALCNTDSP 518
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 525 FVDIAIPCNTKSSHSIGLMLVGC 593
           FVD+ + CN  S  +  ++L  C
Sbjct: 35  FVDVTLACNEASLKAHKVVLSAC 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,674
Number of Sequences: 438
Number of extensions: 4874
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)