Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J14
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protei...    76   2e-14
AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3 pr...    76   2e-14
AY530908-1|AAT01433.1|  132|Caenorhabditis elegans profilin-1 pr...    62   2e-10
AL034393-15|CAA22318.1|  132|Caenorhabditis elegans Hypothetical...    62   2e-10
U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protei...    58   5e-09
AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2 pr...    58   5e-09

>U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protein 3
           protein.
          Length = 126

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 40/110 (36%), Positives = 58/110 (52%)
 Frame = +2

Query: 26  VTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDH 205
           V+KAAI G DG VWAKS+ F IS +E       F +   L   G+ + G +++ L+  + 
Sbjct: 17  VSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTGLRLEGQKFLVLNADND 76

Query: 206 IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLXXYLITCGY 355
            I  K G  G    KT QAV+IS+YE+ +QP+  +     L  Y  +  Y
Sbjct: 77  RIIGKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126


>AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3
           protein.
          Length = 126

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 40/110 (36%), Positives = 58/110 (52%)
 Frame = +2

Query: 26  VTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDH 205
           V+KAAI G DG VWAKS+ F IS +E       F +   L   G+ + G +++ L+  + 
Sbjct: 17  VSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTGLRLEGQKFLVLNADND 76

Query: 206 IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLXXYLITCGY 355
            I  K G  G    KT QAV+IS+YE+ +QP+  +     L  Y  +  Y
Sbjct: 77  RIIGKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126


>AY530908-1|AAT01433.1|  132|Caenorhabditis elegans profilin-1
           protein.
          Length = 132

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
 Frame = +2

Query: 14  ASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGFENESLLTSGGVTIAGTRY 181
           A+  + + AI G  DG+VWA++E    F+ S++E+   VA F + + + + G  I G  Y
Sbjct: 14  AAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALFNDVTQVPAKGADIEGVHY 73

Query: 182 IYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQ-PQQAASVVEKLXXYLITCGY 355
           +     + +I  K    G   +KT+ AV+I++YE P +   Q    VE +  YL   GY
Sbjct: 74  VVPRTEESLIFGKKENTGFFAVKTKSAVLIAVYEGPNEVAAQVRKAVESMQTYLNNAGY 132


>AL034393-15|CAA22318.1|  132|Caenorhabditis elegans Hypothetical
           protein Y18D10A.20 protein.
          Length = 132

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
 Frame = +2

Query: 14  ASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGFENESLLTSGGVTIAGTRY 181
           A+  + + AI G  DG+VWA++E    F+ S++E+   VA F + + + + G  I G  Y
Sbjct: 14  AAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALFNDVTQVPAKGADIEGVHY 73

Query: 182 IYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQ-PQQAASVVEKLXXYLITCGY 355
           +     + +I  K    G   +KT+ AV+I++YE P +   Q    VE +  YL   GY
Sbjct: 74  VVPRTEESLIFGKKENTGFFAVKTKSAVLIAVYEGPNEVAAQVRKAVESMQTYLNNAGY 132


>U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protein 2
           protein.
          Length = 131

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
 Frame = +2

Query: 17  SRCVTKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYIY 187
           S  + +AAI G DG+VWA+S     F  ++ E+ +  A F + + +   G  +    YI 
Sbjct: 15  SPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGTGADLEEIHYIV 74

Query: 188 LSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLXXYLITCGY 355
               + +I  K  + G    KT QA+VI++YE +  Q     + VE +  YL + GY
Sbjct: 75  PRVEEKLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYLASSGY 131


>AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2
           protein.
          Length = 131

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
 Frame = +2

Query: 17  SRCVTKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYIY 187
           S  + +AAI G DG+VWA+S     F  ++ E+ +  A F + + +   G  +    YI 
Sbjct: 15  SPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGTGADLEEIHYIV 74

Query: 188 LSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLXXYLITCGY 355
               + +I  K  + G    KT QA+VI++YE +  Q     + VE +  YL + GY
Sbjct: 75  PRVEEKLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYLASSGY 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,669,332
Number of Sequences: 27780
Number of extensions: 291537
Number of successful extensions: 662
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)