Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J14
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.          203   1e-54
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.4  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score =  203 bits (495), Expect = 1e-54
 Identities = 91/114 (79%), Positives = 104/114 (91%)
 Frame = +2

Query: 14  ASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLS 193
           ASRCVTKAAIAGHDGN+WAKSEGFE+SK+E+ K+V GFE + +LTS GVT+AG RYIYLS
Sbjct: 13  ASRCVTKAAIAGHDGNLWAKSEGFEVSKEELTKLVQGFEEQDILTSSGVTLAGNRYIYLS 72

Query: 194 GTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLXXYLITCGY 355
           GTD +IRAKLGKVGVHCMKT QAVV+SLYE+PIQPQQAASVVEKL  YL++CGY
Sbjct: 73  GTDRVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLVSCGY 126


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 295 LDGFFIERNDHSLLCLH 245
           + G  IER DH++LC++
Sbjct: 327 ISGAPIERPDHAVLCVY 343


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 77  PTL-PTHCHHDRQWQLL*HI 21
           PT+ P H HH  Q Q L H+
Sbjct: 345 PTMGPPHHHHHHQTQSLQHL 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,481
Number of Sequences: 438
Number of extensions: 3390
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)