Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_J13
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88168-3|AAC24397.1| 204|Caenorhabditis elegans Ribosomal prote... 235 2e-62
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 30 1.2
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 30 1.2
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ... 30 1.6
AL117202-13|CAB55075.1| 580|Caenorhabditis elegans Hypothetical... 29 2.2
U55857-5|AAA98031.1| 602|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical pr... 27 8.8
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 8.8
>U88168-3|AAC24397.1| 204|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 15 protein.
Length = 204
Score = 235 bits (575), Expect = 2e-62
Identities = 106/197 (53%), Positives = 134/197 (68%)
Frame = +1
Query: 49 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLXYRAKQXXX 228
MGAY+Y+QE++RKK SD +R+LLR+R W YRQL+ +HR PRPTRP+KARRL YRAKQ
Sbjct: 1 MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60
Query: 229 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 408
TYGKPK+HGVN+LK ++ Q++AE +SYW
Sbjct: 61 VYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYW 120
Query: 409 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHXY 588
VA+DS+YK++EV+L+DP HKAIRR+P WI VHKHRE RGLTSAGR SRGLGKG +
Sbjct: 121 VAEDSTYKFYEVVLIDPFHKAIRRNPDTQWITKPVHKHREQRGLTSAGRKSRGLGKGWRF 180
Query: 589 SQTKGXSRRAXWLKXNT 639
S T+G S+ W + NT
Sbjct: 181 SATRGGSQAKNWKRKNT 197
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 418 DSSYKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHREMR 534
D Y F +L D + K R DP K++W V AVHK E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 418 DSSYKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHREMR 534
D Y F +L D + K R DP K++W V AVHK E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458
>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
protein Y116F11B.3 protein.
Length = 1042
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = -2
Query: 348 GLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSEYNITLFS 211
GLKVAR LVD +G+ + G ++ T ATT+ + Y TL+S
Sbjct: 972 GLKVAR--DLVD-QNIGVWLGGQVNITTTTATTTSNSTSYPSTLYS 1014
>AL117202-13|CAB55075.1| 580|Caenorhabditis elegans Hypothetical
protein Y47D3A.16 protein.
Length = 580
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -2
Query: 198 SSGFVRPCGPGSAVHTS---QLTVLPYPHTQQKTHNIAQFFPIQLLNISVGTH 49
S+ RP GS+ T V+ PHT T N F + LLN+S+ H
Sbjct: 526 STTTTRPSNVGSSASTPIPLPKRVIKLPHTHTSTQNAQYSFMLLLLNVSLFFH 578
>U55857-5|AAA98031.1| 602|Caenorhabditis elegans Hypothetical
protein K08D10.5 protein.
Length = 602
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 4 VYLVGHARRLPQAAKMGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 171
+ LVG +LP + EL R + + + ++ R W LTR+HR P+
Sbjct: 343 IILVGDMHQLPPYTEDALPA---ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPK 395
>Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical
protein R03D7.2 protein.
Length = 542
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 73 ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 171
EL R + + + ++ R W LTR+HR P+
Sbjct: 264 ELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPK 296
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/57 (29%), Positives = 21/57 (36%)
Frame = -1
Query: 409 PSKSSTHGDHRNDGQHVPQQWIEGCAWASTG*HHGSWACHKWHP*QLDACGHHVAHG 239
P+ HG+H + H A A G HHG H H + HH HG
Sbjct: 452 PAHHGHHGEHHHAPAHHGHHGEHHHAPAHHG-HHGEHGTHHGHHGSHHSPAHHGHHG 507
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/56 (28%), Positives = 21/56 (37%)
Frame = -1
Query: 409 PSKSSTHGDHRNDGQHVPQQWIEGCAWASTG*HHGSWACHKWHP*QLDACGHHVAH 242
P+ HG+H + H G G HH + A H H GHH +H
Sbjct: 500 PAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSH 555
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,562,986
Number of Sequences: 27780
Number of extensions: 301968
Number of successful extensions: 690
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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